BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart18-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-9771c MIMAT0036482 Tupaia chinensis miR-9771c 14 20
bdi-miR2118a MIMAT0035531 Brachypodium distachyon miR2118a 14 20
eca-miR-8939 MIMAT0034468 Equus caballus miR-8939 14 20
atr-miR8558b MIMAT0033949 Amborella trichopoda miR8558b 14 20
atr-miR8590 MIMAT0033877 Amborella trichopoda miR8590 14 20
pde-miR947 MIMAT0025339 Pinus densata miR947 14 20
ame-miR-3737 MIMAT0018606 Apis mellifera miR-3737 14 20
pab-miR947 MIMAT0018160 Picea abies miR947 14 20
pta-miR947 MIMAT0005007 Pinus taeda miR947 14 20
ebv-miR-BART18-3p MIMAT0004835 Epstein Barr miR-BART18-3p 14 20
ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p 12 80
ssc-miR-9856-3p MIMAT0037075 Sus scrofa miR-9856-3p 12 80
tae-miR9654b-3p MIMAT0035764 Triticum aestivum miR9654b-3p 12 80
efu-miR-127 MIMAT0034933 Eptesicus fuscus miR-127 12 80
atr-miR8562b MIMAT0033837 Amborella trichopoda miR8562b 12 80
atr-miR8562a MIMAT0033836 Amborella trichopoda miR8562a 12 80
atr-miR8558a MIMAT0033830 Amborella trichopoda miR8558a 12 80
mtr-miR7697-3p MIMAT0029995 Medicago truncatula miR7697-3p 12 80
sbi-miR6226-5p MIMAT0026424 Sorghum bicolor miR6226-5p 12 80
bta-miR-6522 MIMAT0025540 Bos taurus miR-6522 12 80
ppe-miR482a-3p MIMAT0027272 Prunus persica miR482a-3p 12 80
cca-miR6118-3p MIMAT0024566 Cynara cardunculus miR6118-3p 12 80
bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b 12 80
dme-miR-4986-3p MIMAT0020224 Drosophila melanogaster miR-4986-3p 12 80
sko-miR-4826-5p MIMAT0020032 Saccoglossus kowalevskii miR-4826-5p 12 80
pma-miR-4581 MIMAT0019614 Petromyzon marinus miR-4581 12 80
tca-miR-3827-3p MIMAT0018683 Tribolium castaneum miR-3827-3p 12 80
vvi-miR3634-3p MIMAT0018040 Vitis vinifera miR3634-3p 12 80
hsa-miR-3610 MIMAT0017987 Homo sapiens miR-3610 12 80
hvt-miR-H15-5p MIMAT0012868 Herpesvirus of miR-H15-5p 12 80
cre-miR906-3p MIMAT0004388 Chlamydomonas reinhardtii miR906-3p 12 80
oar-miR-127 MIMAT0001415 Ovis aries miR-127 12 80
>tch-miR-9771c MIMAT0036482 Tupaia chinensis miR-9771c
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggaa 7
|||||||
Sbjct: 1 atcggaa 7
>bdi-miR2118a MIMAT0035531 Brachypodium distachyon miR2118a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcggaa 7
|||||||
Sbjct: 8 atcggaa 2
>eca-miR-8939 MIMAT0034468 Equus caballus miR-8939
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcggaa 7
|||||||
Sbjct: 7 atcggaa 1
>atr-miR8558b MIMAT0033949 Amborella trichopoda miR8558b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcggaa 7
|||||||
Sbjct: 8 atcggaa 2
>atr-miR8590 MIMAT0033877 Amborella trichopoda miR8590
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcggaa 7
|||||||
Sbjct: 8 atcggaa 2
>pde-miR947 MIMAT0025339 Pinus densata miR947
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggaa 7
|||||||
Sbjct: 2 atcggaa 8
>ame-miR-3737 MIMAT0018606 Apis mellifera miR-3737
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggaa 7
|||||||
Sbjct: 2 atcggaa 8
>pab-miR947 MIMAT0018160 Picea abies miR947
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggaa 7
|||||||
Sbjct: 2 atcggaa 8
>pta-miR947 MIMAT0005007 Pinus taeda miR947
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggaa 7
|||||||
Sbjct: 2 atcggaa 8
>ebv-miR-BART18-3p MIMAT0004835 Epstein Barr miR-BART18-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggaa 7
|||||||
Sbjct: 2 atcggaa 8
>ata-miR5181-5p MIMAT0037144 Aegilops tauschii miR5181-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgga 6
||||||
Sbjct: 6 atcgga 1
>ssc-miR-9856-3p MIMAT0037075 Sus scrofa miR-9856-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcggaa 7
||||||
Sbjct: 8 tcggaa 3
>tae-miR9654b-3p MIMAT0035764 Triticum aestivum miR9654b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcggaa 7
||||||
Sbjct: 6 tcggaa 1
>efu-miR-127 MIMAT0034933 Eptesicus fuscus miR-127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgga 6
||||||
Sbjct: 1 atcgga 6
>atr-miR8562b MIMAT0033837 Amborella trichopoda miR8562b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcggaa 7
||||||
Sbjct: 1 tcggaa 6
>atr-miR8562a MIMAT0033836 Amborella trichopoda miR8562a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcggaa 7
||||||
Sbjct: 1 tcggaa 6
>atr-miR8558a MIMAT0033830 Amborella trichopoda miR8558a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcggaa 7
||||||
Sbjct: 7 tcggaa 2
>mtr-miR7697-3p MIMAT0029995 Medicago truncatula miR7697-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgga 6
||||||
Sbjct: 6 atcgga 1
>sbi-miR6226-5p MIMAT0026424 Sorghum bicolor miR6226-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgga 6
||||||
Sbjct: 3 atcgga 8
>bta-miR-6522 MIMAT0025540 Bos taurus miR-6522
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcggaa 7
||||||
Sbjct: 1 tcggaa 6
>ppe-miR482a-3p MIMAT0027272 Prunus persica miR482a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcggaa 7
||||||
Sbjct: 7 tcggaa 2
>cca-miR6118-3p MIMAT0024566 Cynara cardunculus miR6118-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcggaa 7
||||||
Sbjct: 6 tcggaa 1
>bdi-miR5181b MIMAT0020705 Brachypodium distachyon miR5181b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgga 6
||||||
Sbjct: 6 atcgga 1
>dme-miR-4986-3p MIMAT0020224 Drosophila melanogaster
miR-4986-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgga 6
||||||
Sbjct: 3 atcgga 8
>sko-miR-4826-5p MIMAT0020032 Saccoglossus kowalevskii
miR-4826-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgga 6
||||||
Sbjct: 8 atcgga 3
>pma-miR-4581 MIMAT0019614 Petromyzon marinus miR-4581
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcggaa 7
||||||
Sbjct: 3 tcggaa 8
>tca-miR-3827-3p MIMAT0018683 Tribolium castaneum miR-3827-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgga 6
||||||
Sbjct: 6 atcgga 1
>vvi-miR3634-3p MIMAT0018040 Vitis vinifera miR3634-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tcggaa 7
||||||
Sbjct: 7 tcggaa 2
>hsa-miR-3610 MIMAT0017987 Homo sapiens miR-3610
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgga 6
||||||
Sbjct: 3 atcgga 8
>hvt-miR-H15-5p MIMAT0012868 Herpesvirus of miR-H15-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tcggaa 7
||||||
Sbjct: 1 tcggaa 6
>cre-miR906-3p MIMAT0004388 Chlamydomonas reinhardtii miR906-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcgga 6
||||||
Sbjct: 6 atcgga 1
>oar-miR-127 MIMAT0001415 Ovis aries miR-127
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcgga 6
||||||
Sbjct: 1 atcgga 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 52
Number of extensions: 42
Number of successful extensions: 32
Number of sequences better than 100.0: 32
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 32
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
