BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s41
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sko-miR-4826-5p MIMAT0020032 Saccoglossus kowalevskii miR-4826-5p 16 6.9
efu-miR-127 MIMAT0034933 Eptesicus fuscus miR-127 14 27
cbr-miR-7583c-3p MIMAT0029594 Caenorhabditis briggsae miR-7583c-3p 14 27
cbr-miR-7583b MIMAT0029586 Caenorhabditis briggsae miR-7583b 14 27
cbr-miR-7583a-3p MIMAT0029585 Caenorhabditis briggsae miR-7583a-3p 14 27
ath-miR4228-3p MIMAT0032109 Arabidopsis thaliana miR4228-3p 14 27
oan-miR-1420c-5p MIMAT0026754 Ornithorhynchus anatinus miR-1420c-5p 14 27
smo-miR1105 MIMAT0005262 Selaginella moellendorffii miR1105 14 27
oar-miR-127 MIMAT0001415 Ovis aries miR-127 14 27
>sko-miR-4826-5p MIMAT0020032 Saccoglossus kowalevskii
miR-4826-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcggatg 8
||||||||
Sbjct: 8 atcggatg 1
>efu-miR-127 MIMAT0034933 Eptesicus fuscus miR-127
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggat 7
|||||||
Sbjct: 1 atcggat 7
>cbr-miR-7583c-3p MIMAT0029594 Caenorhabditis briggsae
miR-7583c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcggatg 8
|||||||
Sbjct: 8 tcggatg 2
>cbr-miR-7583b MIMAT0029586 Caenorhabditis briggsae miR-7583b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcggatg 8
|||||||
Sbjct: 8 tcggatg 2
>cbr-miR-7583a-3p MIMAT0029585 Caenorhabditis briggsae
miR-7583a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcggatg 8
|||||||
Sbjct: 8 tcggatg 2
>ath-miR4228-3p MIMAT0032109 Arabidopsis thaliana miR4228-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcggatg 8
|||||||
Sbjct: 1 tcggatg 7
>oan-miR-1420c-5p MIMAT0026754 Ornithorhynchus anatinus
miR-1420c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcggat 7
|||||||
Sbjct: 7 atcggat 1
>smo-miR1105 MIMAT0005262 Selaginella moellendorffii miR1105
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcggatg 8
|||||||
Sbjct: 2 tcggatg 8
>oar-miR-127 MIMAT0001415 Ovis aries miR-127
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcggat 7
|||||||
Sbjct: 1 atcggat 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 87
Number of extensions: 77
Number of successful extensions: 56
Number of sequences better than 100.0: 9
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
