BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-10-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8280-5p MIMAT0033061 Pristionchus pacificus miR-8280-5p 16 6.9
ppc-miR-8279-5p MIMAT0033057 Pristionchus pacificus miR-8279-5p 16 6.9
ppc-miR-8225-5p MIMAT0032892 Pristionchus pacificus miR-8225-5p 16 6.9
hco-miR-5987 MIMAT0023501 Haemonchus contortus miR-5987 16 6.9
asu-miR-43d-5p MIMAT0021433 Ascaris suum miR-43d-5p 16 6.9
ppc-miR-2266 MIMAT0011701 Pristionchus pacificus miR-2266 16 6.9
rlcv-miR-rL1-10-5p MIMAT0019088 Rhesus lymphocryptovirus miR-rL1... 16 6.9
atr-miR8553a MIMAT0033824 Amborella trichopoda miR8553a 14 27
ppc-miR-8233-3p MIMAT0032919 Pristionchus pacificus miR-8233-3p 14 27
mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p 14 27
bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o 14 27
mtr-miR5749 MIMAT0023129 Medicago truncatula miR5749 14 27
asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p 14 27
bdi-miR5068 MIMAT0020577 Brachypodium distachyon miR5068 14 27
ppc-miR-2262 MIMAT0011688 Pristionchus pacificus miR-2262 14 27
>ppc-miR-8280-5p MIMAT0033061 Pristionchus pacificus miR-8280-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcgggtt 8
||||||||
Sbjct: 8 atcgggtt 1
>ppc-miR-8279-5p MIMAT0033057 Pristionchus pacificus miR-8279-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcgggtt 8
||||||||
Sbjct: 8 atcgggtt 1
>ppc-miR-8225-5p MIMAT0032892 Pristionchus pacificus miR-8225-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcgggtt 8
||||||||
Sbjct: 8 atcgggtt 1
>hco-miR-5987 MIMAT0023501 Haemonchus contortus miR-5987
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcgggtt 8
||||||||
Sbjct: 8 atcgggtt 1
>asu-miR-43d-5p MIMAT0021433 Ascaris suum miR-43d-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcgggtt 8
||||||||
Sbjct: 8 atcgggtt 1
>ppc-miR-2266 MIMAT0011701 Pristionchus pacificus miR-2266
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atcgggtt 8
||||||||
Sbjct: 8 atcgggtt 1
>rlcv-miR-rL1-10-5p MIMAT0019088 Rhesus lymphocryptovirus
miR-rL1-10-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atcgggtt 8
||||||||
Sbjct: 1 atcgggtt 8
>atr-miR8553a MIMAT0033824 Amborella trichopoda miR8553a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcgggt 7
|||||||
Sbjct: 1 atcgggt 7
>ppc-miR-8233-3p MIMAT0032919 Pristionchus pacificus miR-8233-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcgggtt 8
|||||||
Sbjct: 7 tcgggtt 1
>mmu-miR-7027-3p MIMAT0027959 Mus musculus miR-7027-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcgggtt 8
|||||||
Sbjct: 1 tcgggtt 7
>bta-miR-2285o MIMAT0025530 Bos taurus miR-2285o
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcgggtt 8
|||||||
Sbjct: 8 tcgggtt 2
>mtr-miR5749 MIMAT0023129 Medicago truncatula miR5749
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcgggtt 8
|||||||
Sbjct: 2 tcgggtt 8
>asu-miR-76-5p MIMAT0021470 Ascaris suum miR-76-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcgggtt 8
|||||||
Sbjct: 1 tcgggtt 7
>bdi-miR5068 MIMAT0020577 Brachypodium distachyon miR5068
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcgggt 7
|||||||
Sbjct: 1 atcgggt 7
>ppc-miR-2262 MIMAT0011688 Pristionchus pacificus miR-2262
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcgggt 7
|||||||
Sbjct: 8 atcgggt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 206
Number of extensions: 184
Number of successful extensions: 161
Number of sequences better than 100.0: 15
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
