BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvt-miR-h8
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hvt-miR-H8 MIMAT0012720 Herpesvirus of miR-H8 16 6.9
tch-miR-6529 MIMAT0036481 Tupaia chinensis miR-6529 14 27
ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p 14 27
ppc-miR-8364p-3p MIMAT0033160 Pristionchus pacificus miR-8364p-3p 14 27
ppc-miR-8364o-3p MIMAT0033139 Pristionchus pacificus miR-8364o-3p 14 27
cpa-miR8143 MIMAT0031840 Carica papaya miR8143 14 27
bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p 14 27
lja-miR7539 MIMAT0029365 Lotus japonicus miR7539 14 27
mml-miR-6529-5p MIMAT0028314 Macaca mulatta miR-6529-5p 14 27
bta-miR-6529a MIMAT0025565 Bos taurus miR-6529a 14 27
hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615 14 27
cte-miR-2716 MIMAT0013585 Capitella teleta miR-2716 14 27
cel-miR-1018 MIMAT0005031 Caenorhabditis elegans miR-1018 14 27
mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p 14 27
>hvt-miR-H8 MIMAT0012720 Herpesvirus of miR-H8
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atctctcg 8
||||||||
Sbjct: 1 atctctcg 8
>tch-miR-6529 MIMAT0036481 Tupaia chinensis miR-6529
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 7 atctctc 1
>ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctctcg 8
|||||||
Sbjct: 8 tctctcg 2
>ppc-miR-8364p-3p MIMAT0033160 Pristionchus pacificus
miR-8364p-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctctcg 8
|||||||
Sbjct: 7 tctctcg 1
>ppc-miR-8364o-3p MIMAT0033139 Pristionchus pacificus
miR-8364o-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctctcg 8
|||||||
Sbjct: 7 tctctcg 1
>cpa-miR8143 MIMAT0031840 Carica papaya miR8143
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 7 atctctc 1
>bdi-miR7754-3p MIMAT0030251 Brachypodium distachyon miR7754-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctctcg 8
|||||||
Sbjct: 2 tctctcg 8
>lja-miR7539 MIMAT0029365 Lotus japonicus miR7539
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tctctcg 8
|||||||
Sbjct: 8 tctctcg 2
>mml-miR-6529-5p MIMAT0028314 Macaca mulatta miR-6529-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 7 atctctc 1
>bta-miR-6529a MIMAT0025565 Bos taurus miR-6529a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 7 atctctc 1
>hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tctctcg 8
|||||||
Sbjct: 1 tctctcg 7
>cte-miR-2716 MIMAT0013585 Capitella teleta miR-2716
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 7 atctctc 1
>cel-miR-1018 MIMAT0005031 Caenorhabditis elegans miR-1018
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 8 atctctc 2
>mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctctc 7
|||||||
Sbjct: 8 atctctc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 158
Number of extensions: 143
Number of successful extensions: 122
Number of sequences better than 100.0: 14
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
