BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bkv-miR-b1-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

bkv-miR-B1-5p MIMAT0009149 BK polyomavirus miR-B1-5p                   16   6.9  
ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p                    14      27
nve-miR-9464 MIMAT0035429 Nematostella vectensis miR-9464              14      27
efu-miR-143 MIMAT0035123 Eptesicus fuscus miR-143                      14      27
eca-miR-9105 MIMAT0034652 Equus caballus miR-9105                      14      27
eca-miR-8941 MIMAT0034470 Equus caballus miR-8941                      14      27
oan-miR-7415-3p MIMAT0028979 Ornithorhynchus anatinus miR-7415-3p      14      27
mdo-miR-7318-5p MIMAT0028636 Monodelphis domestica miR-7318-5p         14      27
mml-miR-7194-3p MIMAT0028349 Macaca mulatta miR-7194-3p                14      27
mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p                  14      27
mmu-miR-7026-5p MIMAT0027956 Mus musculus miR-7026-5p                  14      27
hsa-miR-6761-5p MIMAT0027422 Homo sapiens miR-6761-5p                  14      27
hsa-miR-4330 MIMAT0016924 Homo sapiens miR-4330                        14      27
hsa-miR-3200-5p MIMAT0017392 Homo sapiens miR-3200-5p                  14      27
jcv-miR-J1-5p MIMAT0009147 JC polyomavirus miR-J1-5p                   14      27
cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837                    14      27
>bkv-miR-B1-5p MIMAT0009149 BK polyomavirus miR-B1-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atctgaga 8
         ||||||||
Sbjct: 1 atctgaga 8
>ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 7 tctgaga 1
>nve-miR-9464 MIMAT0035429 Nematostella vectensis miR-9464
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 1 tctgaga 7
>efu-miR-143 MIMAT0035123 Eptesicus fuscus miR-143
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 2 tctgaga 8
>eca-miR-9105 MIMAT0034652 Equus caballus miR-9105
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 1 tctgaga 7
>eca-miR-8941 MIMAT0034470 Equus caballus miR-8941
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 1 tctgaga 7
>oan-miR-7415-3p MIMAT0028979 Ornithorhynchus anatinus
         miR-7415-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atctgag 7
         |||||||
Sbjct: 2 atctgag 8
>mdo-miR-7318-5p MIMAT0028636 Monodelphis domestica miR-7318-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atctgag 7
         |||||||
Sbjct: 8 atctgag 2
>mml-miR-7194-3p MIMAT0028349 Macaca mulatta miR-7194-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atctgag 7
         |||||||
Sbjct: 7 atctgag 1
>mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 7 tctgaga 1
>mmu-miR-7026-5p MIMAT0027956 Mus musculus miR-7026-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 2 tctgaga 8
>hsa-miR-6761-5p MIMAT0027422 Homo sapiens miR-6761-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 1 tctgaga 7
>hsa-miR-4330 MIMAT0016924 Homo sapiens miR-4330
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atctgag 7
         |||||||
Sbjct: 8 atctgag 2
>hsa-miR-3200-5p MIMAT0017392 Homo sapiens miR-3200-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atctgag 7
         |||||||
Sbjct: 2 atctgag 8
>jcv-miR-J1-5p MIMAT0009147 JC polyomavirus miR-J1-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 2 tctgaga 8
>cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tctgaga 8
         |||||||
Sbjct: 7 tctgaga 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 149
Number of extensions: 132
Number of successful extensions: 100
Number of sequences better than 100.0: 16
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)