BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p 14 27
osa-miR6249b MIMAT0031378 Oryza sativa miR6249b 14 27
mdo-miR-7291-3p MIMAT0028567 Monodelphis domestica miR-7291-3p 14 27
hsa-miR-6754-3p MIMAT0027409 Homo sapiens miR-6754-3p 14 27
osa-miR6249a MIMAT0024871 Oryza sativa miR6249a 14 27
hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202 14 27
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156 14 27
ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999 14 27
gma-miR5376 MIMAT0021617 Glycine max miR5376 14 27
rno-miR-3551-5p MIMAT0017809 Rattus norvegicus miR-3551-5p 14 27
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526 14 27
bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p 14 27
bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842 14 27
mdv2-miR-M29-5p MIMAT0004476 Mareks disease miR-M29-5p 14 27
>hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcttca 7
|||||||
Sbjct: 2 atcttca 8
>osa-miR6249b MIMAT0031378 Oryza sativa miR6249b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttcac 8
|||||||
Sbjct: 8 tcttcac 2
>mdo-miR-7291-3p MIMAT0028567 Monodelphis domestica miR-7291-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcac 8
|||||||
Sbjct: 1 tcttcac 7
>hsa-miR-6754-3p MIMAT0027409 Homo sapiens miR-6754-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcac 8
|||||||
Sbjct: 1 tcttcac 7
>osa-miR6249a MIMAT0024871 Oryza sativa miR6249a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttcac 8
|||||||
Sbjct: 8 tcttcac 2
>hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 8 atcttca 2
>ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcac 8
|||||||
Sbjct: 1 tcttcac 7
>gma-miR5376 MIMAT0021617 Glycine max miR5376
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>rno-miR-3551-5p MIMAT0017809 Rattus norvegicus miR-3551-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcac 8
|||||||
Sbjct: 1 tcttcac 7
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 8 atcttca 2
>bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>mdv2-miR-M29-5p MIMAT0004476 Mareks disease miR-M29-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcac 8
|||||||
Sbjct: 1 tcttcac 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 198
Number of extensions: 184
Number of successful extensions: 139
Number of sequences better than 100.0: 14
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
