BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR154-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8364t-5p MIMAT0033284 Pristionchus pacificus miR-8364t-5p 14 27
ppc-miR-8364s-5p MIMAT0033270 Pristionchus pacificus miR-8364s-5p 14 27
ppc-miR-8364r-5p MIMAT0033262 Pristionchus pacificus miR-8364r-5p 14 27
ppc-miR-8364e-5p MIMAT0033260 Pristionchus pacificus miR-8364e-5p 14 27
ppc-miR-8364i-5p MIMAT0033216 Pristionchus pacificus miR-8364i-5p 14 27
ppc-miR-8364m-5p MIMAT0033188 Pristionchus pacificus miR-8364m-5p 14 27
ppc-miR-8364a-5p MIMAT0033176 Pristionchus pacificus miR-8364a-5p 14 27
ppc-miR-8364w-5p MIMAT0033161 Pristionchus pacificus miR-8364w-5p 14 27
ppc-miR-8364g-5p MIMAT0033119 Pristionchus pacificus miR-8364g-5p 14 27
ppc-miR-8364f-5p MIMAT0033109 Pristionchus pacificus miR-8364f-5p 14 27
ppc-miR-8364b-5p MIMAT0033081 Pristionchus pacificus miR-8364b-5p 14 27
ppc-miR-8364n-5p MIMAT0033045 Pristionchus pacificus miR-8364n-5p 14 27
ppc-miR-8364c-5p MIMAT0033030 Pristionchus pacificus miR-8364c-5p 14 27
ppc-miR-8364j-5p MIMAT0033026 Pristionchus pacificus miR-8364j-5p 14 27
hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p 14 27
mml-miR-7186-3p MIMAT0028327 Macaca mulatta miR-7186-3p 14 27
mmu-miR-7013-5p MIMAT0027930 Mus musculus miR-7013-5p 14 27
hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202 14 27
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156 14 27
gma-miR5376 MIMAT0021617 Glycine max miR5376 14 27
mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293 14 27
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526 14 27
bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p 14 27
bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842 14 27
>ppc-miR-8364t-5p MIMAT0033284 Pristionchus pacificus
miR-8364t-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364s-5p MIMAT0033270 Pristionchus pacificus
miR-8364s-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364r-5p MIMAT0033262 Pristionchus pacificus
miR-8364r-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364e-5p MIMAT0033260 Pristionchus pacificus
miR-8364e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364i-5p MIMAT0033216 Pristionchus pacificus
miR-8364i-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364m-5p MIMAT0033188 Pristionchus pacificus
miR-8364m-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364a-5p MIMAT0033176 Pristionchus pacificus
miR-8364a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364w-5p MIMAT0033161 Pristionchus pacificus
miR-8364w-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364g-5p MIMAT0033119 Pristionchus pacificus
miR-8364g-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364f-5p MIMAT0033109 Pristionchus pacificus
miR-8364f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364b-5p MIMAT0033081 Pristionchus pacificus
miR-8364b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364n-5p MIMAT0033045 Pristionchus pacificus
miR-8364n-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364c-5p MIMAT0033030 Pristionchus pacificus
miR-8364c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364j-5p MIMAT0033026 Pristionchus pacificus
miR-8364j-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcttca 7
|||||||
Sbjct: 2 atcttca 8
>mml-miR-7186-3p MIMAT0028327 Macaca mulatta miR-7186-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tcttcat 8
|||||||
Sbjct: 1 tcttcat 7
>mmu-miR-7013-5p MIMAT0027930 Mus musculus miR-7013-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttcat 8
|||||||
Sbjct: 8 tcttcat 2
>hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 8 atcttca 2
>gma-miR5376 MIMAT0021617 Glycine max miR5376
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttcat 8
|||||||
Sbjct: 8 tcttcat 2
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 8 atcttca 2
>bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
>bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttca 7
|||||||
Sbjct: 7 atcttca 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 209
Number of extensions: 185
Number of successful extensions: 148
Number of sequences better than 100.0: 24
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)