BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wssv-miR154-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8364t-5p MIMAT0033284 Pristionchus pacificus miR-8364t-5p      14      27
ppc-miR-8364s-5p MIMAT0033270 Pristionchus pacificus miR-8364s-5p      14      27
ppc-miR-8364r-5p MIMAT0033262 Pristionchus pacificus miR-8364r-5p      14      27
ppc-miR-8364e-5p MIMAT0033260 Pristionchus pacificus miR-8364e-5p      14      27
ppc-miR-8364i-5p MIMAT0033216 Pristionchus pacificus miR-8364i-5p      14      27
ppc-miR-8364m-5p MIMAT0033188 Pristionchus pacificus miR-8364m-5p      14      27
ppc-miR-8364a-5p MIMAT0033176 Pristionchus pacificus miR-8364a-5p      14      27
ppc-miR-8364w-5p MIMAT0033161 Pristionchus pacificus miR-8364w-5p      14      27
ppc-miR-8364g-5p MIMAT0033119 Pristionchus pacificus miR-8364g-5p      14      27
ppc-miR-8364f-5p MIMAT0033109 Pristionchus pacificus miR-8364f-5p      14      27
ppc-miR-8364b-5p MIMAT0033081 Pristionchus pacificus miR-8364b-5p      14      27
ppc-miR-8364n-5p MIMAT0033045 Pristionchus pacificus miR-8364n-5p      14      27
ppc-miR-8364c-5p MIMAT0033030 Pristionchus pacificus miR-8364c-5p      14      27
ppc-miR-8364j-5p MIMAT0033026 Pristionchus pacificus miR-8364j-5p      14      27
hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p                          14      27
mml-miR-7186-3p MIMAT0028327 Macaca mulatta miR-7186-3p                14      27
mmu-miR-7013-5p MIMAT0027930 Mus musculus miR-7013-5p                  14      27
hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202                       14      27
nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156                     14      27
gma-miR5376 MIMAT0021617 Glycine max miR5376                           14      27
mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293                   14      27
gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526                       14      27
bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p                   14      27
bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842                         14      27
>ppc-miR-8364t-5p MIMAT0033284 Pristionchus pacificus
         miR-8364t-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364s-5p MIMAT0033270 Pristionchus pacificus
         miR-8364s-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364r-5p MIMAT0033262 Pristionchus pacificus
         miR-8364r-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364e-5p MIMAT0033260 Pristionchus pacificus
         miR-8364e-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364i-5p MIMAT0033216 Pristionchus pacificus
         miR-8364i-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364m-5p MIMAT0033188 Pristionchus pacificus
         miR-8364m-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364a-5p MIMAT0033176 Pristionchus pacificus
         miR-8364a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364w-5p MIMAT0033161 Pristionchus pacificus
         miR-8364w-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364g-5p MIMAT0033119 Pristionchus pacificus
         miR-8364g-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364f-5p MIMAT0033109 Pristionchus pacificus
         miR-8364f-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364b-5p MIMAT0033081 Pristionchus pacificus
         miR-8364b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364n-5p MIMAT0033045 Pristionchus pacificus
         miR-8364n-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364c-5p MIMAT0033030 Pristionchus pacificus
         miR-8364c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>ppc-miR-8364j-5p MIMAT0033026 Pristionchus pacificus
         miR-8364j-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 2 atcttca 8
>mml-miR-7186-3p MIMAT0028327 Macaca mulatta miR-7186-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 1 tcttcat 7
>mmu-miR-7013-5p MIMAT0027930 Mus musculus miR-7013-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 8 tcttcat 2
>hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 7 atcttca 1
>nta-miR6156 MIMAT0024759 Nicotiana tabacum miR6156
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 8 atcttca 2
>gma-miR5376 MIMAT0021617 Glycine max miR5376
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 7 atcttca 1
>mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tcttcat 8
         |||||||
Sbjct: 8 tcttcat 2
>gga-miR-3526 MIMAT0016375 Gallus gallus miR-3526
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 8 atcttca 2
>bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 7 atcttca 1
>bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atcttca 7
         |||||||
Sbjct: 7 atcttca 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 209
Number of extensions: 185
Number of successful extensions: 148
Number of sequences better than 100.0: 24
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)