BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR113
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR396c-3p MIMAT0037171 Aegilops tauschii miR396c-3p 14 27
efu-miR-9342 MIMAT0035110 Eptesicus fuscus miR-9342 14 27
efu-miR-9303 MIMAT0034976 Eptesicus fuscus miR-9303 14 27
eca-miR-8974 MIMAT0034511 Equus caballus miR-8974 14 27
bdi-miR7763-5p MIMAT0030272 Brachypodium distachyon miR7763-5p 14 27
ppe-miR6271 MIMAT0027296 Prunus persica miR6271 14 27
aca-miR-5430 MIMAT0022051 Anolis carolinensis miR-5430 14 27
bdi-miR396e-3p MIMAT0027060 Brachypodium distachyon miR396e-3p 14 27
bmo-miR-3381-5p MIMAT0015573 Bombyx mori miR-3381-5p 14 27
zma-miR396f-3p MIMAT0015350 Zea mays miR396f-3p 14 27
zma-miR396e-3p MIMAT0015349 Zea mays miR396e-3p 14 27
bmo-miR-2787-5p MIMAT0013683 Bombyx mori miR-2787-5p 14 27
sme-miR-2203-3p MIMAT0011420 Schmidtea mediterranea miR-2203-3p 14 27
osa-miR396c-3p MIMAT0022865 Oryza sativa miR396c-3p 14 27
mmu-miR-351-3p MIMAT0017042 Mus musculus miR-351-3p 14 27
rno-miR-351-3p MIMAT0017041 Rattus norvegicus miR-351-3p 14 27
>ata-miR396c-3p MIMAT0037171 Aegilops tauschii miR396c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
>efu-miR-9342 MIMAT0035110 Eptesicus fuscus miR-9342
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcttga 7
|||||||
Sbjct: 1 atcttga 7
>efu-miR-9303 MIMAT0034976 Eptesicus fuscus miR-9303
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttga 7
|||||||
Sbjct: 8 atcttga 2
>eca-miR-8974 MIMAT0034511 Equus caballus miR-8974
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttga 7
|||||||
Sbjct: 8 atcttga 2
>bdi-miR7763-5p MIMAT0030272 Brachypodium distachyon miR7763-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcttga 7
|||||||
Sbjct: 2 atcttga 8
>ppe-miR6271 MIMAT0027296 Prunus persica miR6271
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttga 7
|||||||
Sbjct: 7 atcttga 1
>aca-miR-5430 MIMAT0022051 Anolis carolinensis miR-5430
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttga 7
|||||||
Sbjct: 8 atcttga 2
>bdi-miR396e-3p MIMAT0027060 Brachypodium distachyon miR396e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
>bmo-miR-3381-5p MIMAT0015573 Bombyx mori miR-3381-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttga 7
|||||||
Sbjct: 7 atcttga 1
>zma-miR396f-3p MIMAT0015350 Zea mays miR396f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
>zma-miR396e-3p MIMAT0015349 Zea mays miR396e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
>bmo-miR-2787-5p MIMAT0013683 Bombyx mori miR-2787-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atcttga 7
|||||||
Sbjct: 2 atcttga 8
>sme-miR-2203-3p MIMAT0011420 Schmidtea mediterranea miR-2203-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atcttga 7
|||||||
Sbjct: 8 atcttga 2
>osa-miR396c-3p MIMAT0022865 Oryza sativa miR396c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
>mmu-miR-351-3p MIMAT0017042 Mus musculus miR-351-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
>rno-miR-351-3p MIMAT0017041 Rattus norvegicus miR-351-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tcttgac 8
|||||||
Sbjct: 8 tcttgac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 151
Number of extensions: 135
Number of successful extensions: 104
Number of sequences better than 100.0: 16
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
