BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m44-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p 14 20
mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p 14 20
ppe-miR6292 MIMAT0027327 Prunus persica miR6292 14 20
dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster miR-4911-3p 14 20
ath-miR2938 MIMAT0014142 Arabidopsis thaliana miR2938 14 20
bmo-miR-2826 MIMAT0013737 Bombyx mori miR-2826 14 20
bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738 14 20
mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1 14 20
rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus miR-rL1-... 14 20
ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p 14 20
oha-miR-130c-5p MIMAT0036691 Ophiophagus hannah miR-130c-5p 12 80
gma-miR4348b MIMAT0036344 Glycine max miR4348b 12 80
chi-miR-130a-5p MIMAT0035943 Capra hircus miR-130a-5p 12 80
dvi-miR-9544a-3p MIMAT0035629 Drosophila virilis miR-9544a-3p 12 80
eca-miR-8926 MIMAT0034454 Equus caballus miR-8926 12 80
gra-miR7492o MIMAT0034251 Gossypium raimondii miR7492o 12 80
atr-miR8556 MIMAT0033827 Amborella trichopoda miR8556 12 80
ppc-miR-8276-3p MIMAT0033052 Pristionchus pacificus miR-8276-3p 12 80
ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p 12 80
ssa-miR-130d-1-5p MIMAT0032327 Salmo salar miR-130d-1-5p 12 80
stu-miR8019-3p MIMAT0030916 Solanum tuberosum miR8019-3p 12 80
prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p 12 80
bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon miR7776-3p.1 12 80
bdi-miR7715-5p MIMAT0030152 Brachypodium distachyon miR7715-5p 12 80
bdi-miR5174d-3p MIMAT0030106 Brachypodium distachyon miR5174d-3p 12 80
mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p 12 80
mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p 12 80
mdo-miR-7274-3p MIMAT0028523 Monodelphis domestica miR-7274-3p 12 80
mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p 12 80
mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p 12 80
hme-miR-316 MIMAT0024978 Heliconius melpomene miR-316 12 80
mse-miR-316 MIMAT0024434 Manduca sexta miR-316 12 80
cgr-miR-130a-5p MIMAT0023754 Cricetulus griseus miR-130a-5p 12 80
mtr-miR5747 MIMAT0023127 Medicago truncatula miR5747 12 80
cel-miR-5595-5p MIMAT0022313 Caenorhabditis elegans miR-5595-5p 12 80
sbi-miR5570 MIMAT0022251 Sorghum bicolor miR5570 12 80
osa-miR5487 MIMAT0022120 Oryza sativa miR5487 12 80
aca-miR-130a-1-5p MIMAT0021739 Anolis carolinensis miR-130a-1-5p 12 80
sbi-miR5388 MIMAT0021686 Sorghum bicolor miR5388 12 80
gma-miR5370 MIMAT0021607 Glycine max miR5370 12 80
dme-miR-4977-5p MIMAT0020208 Drosophila melanogaster miR-4977-5p 12 80
cel-miR-4923a MIMAT0020129 Caenorhabditis elegans miR-4923a 12 80
hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b 12 80
hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p 12 80
tca-miR-316-5p MIMAT0018716 Tribolium castaneum miR-316-5p 12 80
cin-miR-4217-3p MIMAT0016839 Ciona intestinalis miR-4217-3p 12 80
cin-miR-4149-5p MIMAT0016752 Ciona intestinalis miR-4149-5p 12 80
cin-miR-4000b-2-3p MIMAT0016965 Ciona intestinalis miR-4000b-2-3p 12 80
rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p 12 80
bmo-miR-3279 MIMAT0015464 Bombyx mori miR-3279 12 80
bmo-miR-3270 MIMAT0015455 Bombyx mori miR-3270 12 80
hsa-miR-3156-5p MIMAT0015030 Homo sapiens miR-3156-5p 12 80
api-miR-316 MIMAT0014731 Acyrthosiphon pisum miR-316 12 80
cqu-miR-316 MIMAT0014442 Culex quinquefasciatus miR-316 12 80
ghr-miR2949c MIMAT0014347 Gossypium hirsutum miR2949c 12 80
ghr-miR2949b MIMAT0014346 Gossypium hirsutum miR2949b 12 80
aae-miR-316 MIMAT0014317 Aedes aegypti miR-316 12 80
bta-miR-2891 MIMAT0013849 Bos taurus miR-2891 12 80
bmo-miR-2759 MIMAT0013631 Bombyx mori miR-2759 12 80
bmo-miR-316-5p MIMAT0013597 Bombyx mori miR-316-5p 12 80
bta-miR-2424 MIMAT0011993 Bos taurus miR-2424 12 80
cel-miR-2209c-3p MIMAT0011434 Caenorhabditis elegans miR-2209c-3p 12 80
sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p 12 80
osa-miR2120 MIMAT0011179 Oryza sativa miR2120 12 80
ame-miR-316 MIMAT0010122 Apis mellifera miR-316 12 80
dya-miR-316 MIMAT0009080 Drosophila yakuba miR-316 12 80
dwi-miR-316 MIMAT0009000 Drosophila willistoni miR-316 12 80
dvi-miR-316-5p MIMAT0008945 Drosophila virilis miR-316-5p 12 80
dsi-miR-316 MIMAT0008869 Drosophila simulans miR-316 12 80
dse-miR-316 MIMAT0008818 Drosophila sechellia miR-316 12 80
dpe-miR-316 MIMAT0008764 Drosophila persimilis miR-316 12 80
dmo-miR-316 MIMAT0008627 Drosophila mojavensis miR-316 12 80
dgr-miR-316 MIMAT0008591 Drosophila grimshawi miR-316 12 80
der-miR-316 MIMAT0008496 Drosophila erecta miR-316 12 80
dan-miR-316 MIMAT0008449 Drosophila ananassae miR-316 12 80
mml-miR-511-5p MIMAT0006370 Macaca mulatta miR-511-5p 12 80
gga-miR-1786 MIMAT0007698 Gallus gallus miR-1786 12 80
gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719 12 80
mdo-miR-130a-5p MIMAT0026664 Monodelphis domestica miR-130a-5p 12 80
cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p 12 80
hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p 12 80
mml-miR-130a-5p MIMAT0026566 Macaca mulatta miR-130a-5p 12 80
dps-miR-316 MIMAT0001262 Drosophila pseudoobscura miR-316 12 80
rno-miR-130a-5p MIMAT0017121 Rattus norvegicus miR-130a-5p 12 80
dme-miR-316-5p MIMAT0000408 Drosophila melanogaster miR-316-5p 12 80
mmu-miR-130a-5p MIMAT0016983 Mus musculus miR-130a-5p 12 80
>sly-miR9476-3p MIMAT0035470 Solanum lycopersicum miR9476-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctttt 7
|||||||
Sbjct: 8 atctttt 2
>mml-miR-7207-5p MIMAT0028380 Macaca mulatta miR-7207-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 1 atctttt 7
>ppe-miR6292 MIMAT0027327 Prunus persica miR6292
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 2 atctttt 8
>dme-miR-4911-3p MIMAT0020504 Drosophila melanogaster
miR-4911-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 1 atctttt 7
>ath-miR2938 MIMAT0014142 Arabidopsis thaliana miR2938
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 2 atctttt 8
>bmo-miR-2826 MIMAT0013737 Bombyx mori miR-2826
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atctttt 7
|||||||
Sbjct: 7 atctttt 1
>bmo-miR-2738 MIMAT0012616 Bombyx mori miR-2738
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 1 atctttt 7
>mcmv-miR-M44-1 MIMAT0005546 Mouse cytomegalovirus miR-M44-1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 2 atctttt 8
>rlcv-miR-rL1-2-3p MIMAT0003428 Rhesus lymphocryptovirus
miR-rL1-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 2 atctttt 8
>ebv-miR-BHRF1-2-3p MIMAT0000997 Epstein Barr miR-BHRF1-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atctttt 7
|||||||
Sbjct: 2 atctttt 8
>oha-miR-130c-5p MIMAT0036691 Ophiophagus hannah miR-130c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>gma-miR4348b MIMAT0036344 Glycine max miR4348b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 1 tctttt 6
>chi-miR-130a-5p MIMAT0035943 Capra hircus miR-130a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dvi-miR-9544a-3p MIMAT0035629 Drosophila virilis miR-9544a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 7 tctttt 2
>eca-miR-8926 MIMAT0034454 Equus caballus miR-8926
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 8 atcttt 3
>gra-miR7492o MIMAT0034251 Gossypium raimondii miR7492o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 8 atcttt 3
>atr-miR8556 MIMAT0033827 Amborella trichopoda miR8556
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 7 tctttt 2
>ppc-miR-8276-3p MIMAT0033052 Pristionchus pacificus miR-8276-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 6 tctttt 1
>ssa-miR-153a-2-5p MIMAT0032389 Salmo salar miR-153a-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>ssa-miR-130d-1-5p MIMAT0032327 Salmo salar miR-130d-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>stu-miR8019-3p MIMAT0030916 Solanum tuberosum miR8019-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 6 tctttt 1
>prd-miR-7969-3p MIMAT0030841 Panagrellus redivivus miR-7969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 8 atcttt 3
>bdi-miR7776-3p.1 MIMAT0030305 Brachypodium distachyon
miR7776-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>bdi-miR7715-5p MIMAT0030152 Brachypodium distachyon miR7715-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 8 atcttt 3
>bdi-miR5174d-3p MIMAT0030106 Brachypodium distachyon
miR5174d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>mdo-miR-7316-5p MIMAT0028632 Monodelphis domestica miR-7316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>mdo-miR-7312-5p MIMAT0028624 Monodelphis domestica miR-7312-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>mdo-miR-7274-3p MIMAT0028523 Monodelphis domestica miR-7274-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 1 tctttt 6
>mmu-miR-6967-3p MIMAT0027837 Mus musculus miR-6967-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>hme-miR-316 MIMAT0024978 Heliconius melpomene miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>mse-miR-316 MIMAT0024434 Manduca sexta miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>cgr-miR-130a-5p MIMAT0023754 Cricetulus griseus miR-130a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>mtr-miR5747 MIMAT0023127 Medicago truncatula miR5747
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 6 tctttt 1
>cel-miR-5595-5p MIMAT0022313 Caenorhabditis elegans miR-5595-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>sbi-miR5570 MIMAT0022251 Sorghum bicolor miR5570
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 6 tctttt 1
>osa-miR5487 MIMAT0022120 Oryza sativa miR5487
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>aca-miR-130a-1-5p MIMAT0021739 Anolis carolinensis
miR-130a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>sbi-miR5388 MIMAT0021686 Sorghum bicolor miR5388
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 1 atcttt 6
>gma-miR5370 MIMAT0021607 Glycine max miR5370
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 8 atcttt 3
>dme-miR-4977-5p MIMAT0020208 Drosophila melanogaster
miR-4977-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>cel-miR-4923a MIMAT0020129 Caenorhabditis elegans miR-4923a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 6 tctttt 1
>hsa-miR-4662b MIMAT0019736 Homo sapiens miR-4662b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>tca-miR-316-5p MIMAT0018716 Tribolium castaneum miR-316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>cin-miR-4217-3p MIMAT0016839 Ciona intestinalis miR-4217-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>cin-miR-4149-5p MIMAT0016752 Ciona intestinalis miR-4149-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>cin-miR-4000b-2-3p MIMAT0016965 Ciona intestinalis
miR-4000b-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 2 tctttt 7
>rno-miR-741-3p MIMAT0017902 Rattus norvegicus miR-741-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>bmo-miR-3279 MIMAT0015464 Bombyx mori miR-3279
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 1 tctttt 6
>bmo-miR-3270 MIMAT0015455 Bombyx mori miR-3270
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>hsa-miR-3156-5p MIMAT0015030 Homo sapiens miR-3156-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>api-miR-316 MIMAT0014731 Acyrthosiphon pisum miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>cqu-miR-316 MIMAT0014442 Culex quinquefasciatus miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>ghr-miR2949c MIMAT0014347 Gossypium hirsutum miR2949c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 1 tctttt 6
>ghr-miR2949b MIMAT0014346 Gossypium hirsutum miR2949b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 1 tctttt 6
>aae-miR-316 MIMAT0014317 Aedes aegypti miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>bta-miR-2891 MIMAT0013849 Bos taurus miR-2891
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 1 atcttt 6
>bmo-miR-2759 MIMAT0013631 Bombyx mori miR-2759
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 8 atcttt 3
>bmo-miR-316-5p MIMAT0013597 Bombyx mori miR-316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>bta-miR-2424 MIMAT0011993 Bos taurus miR-2424
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>cel-miR-2209c-3p MIMAT0011434 Caenorhabditis elegans
miR-2209c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctttt 7
||||||
Sbjct: 6 tctttt 1
>sme-miR-2161-5p MIMAT0012152 Schmidtea mediterranea miR-2161-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atcttt 6
||||||
Sbjct: 3 atcttt 8
>osa-miR2120 MIMAT0011179 Oryza sativa miR2120
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>ame-miR-316 MIMAT0010122 Apis mellifera miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dya-miR-316 MIMAT0009080 Drosophila yakuba miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dwi-miR-316 MIMAT0009000 Drosophila willistoni miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dvi-miR-316-5p MIMAT0008945 Drosophila virilis miR-316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dsi-miR-316 MIMAT0008869 Drosophila simulans miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dse-miR-316 MIMAT0008818 Drosophila sechellia miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dpe-miR-316 MIMAT0008764 Drosophila persimilis miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dmo-miR-316 MIMAT0008627 Drosophila mojavensis miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dgr-miR-316 MIMAT0008591 Drosophila grimshawi miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>der-miR-316 MIMAT0008496 Drosophila erecta miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dan-miR-316 MIMAT0008449 Drosophila ananassae miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>mml-miR-511-5p MIMAT0006370 Macaca mulatta miR-511-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>gga-miR-1786 MIMAT0007698 Gallus gallus miR-1786
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>gga-miR-1719 MIMAT0007616 Gallus gallus miR-1719
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>mdo-miR-130a-5p MIMAT0026664 Monodelphis domestica miR-130a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>cel-miR-787-5p MIMAT0020348 Caenorhabditis elegans miR-787-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atcttt 6
||||||
Sbjct: 6 atcttt 1
>hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 1 tctttt 6
>mml-miR-130a-5p MIMAT0026566 Macaca mulatta miR-130a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dps-miR-316 MIMAT0001262 Drosophila pseudoobscura miR-316
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>rno-miR-130a-5p MIMAT0017121 Rattus norvegicus miR-130a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>dme-miR-316-5p MIMAT0000408 Drosophila melanogaster miR-316-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
>mmu-miR-130a-5p MIMAT0016983 Mus musculus miR-130a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctttt 7
||||||
Sbjct: 3 tctttt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 108
Number of extensions: 98
Number of successful extensions: 86
Number of sequences better than 100.0: 86
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 86
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
