BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b 16 6.9
pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a 16 6.9
gma-miR5379 MIMAT0021620 Glycine max miR5379 16 6.9
mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p 16 6.9
chi-miR-335-3p MIMAT0036148 Capra hircus miR-335-3p 14 27
gra-miR8743a MIMAT0034163 Gossypium raimondii miR8743a 14 27
gra-miR8743e MIMAT0034162 Gossypium raimondii miR8743e 14 27
gra-miR8743d MIMAT0034161 Gossypium raimondii miR8743d 14 27
gra-miR8743c MIMAT0034160 Gossypium raimondii miR8743c 14 27
mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p 14 27
nta-miR6145a MIMAT0024731 Nicotiana tabacum miR6145a 14 27
mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253 14 27
dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster miR-4946-5p 14 27
cin-miR-4143-3p MIMAT0016745 Ciona intestinalis miR-4143-3p 14 27
bmo-miR-2791 MIMAT0013689 Bombyx mori miR-2791 14 27
bmo-miR-2742 MIMAT0012620 Bombyx mori miR-2742 14 27
sme-miR-2160-1-3p MIMAT0011416 Schmidtea mediterranea miR-2160-1-3p 14 27
mml-miR-335-3p MIMAT0026853 Macaca mulatta miR-335-3p 14 27
cel-miR-797-3p MIMAT0015241 Caenorhabditis elegans miR-797-3p 14 27
mmu-miR-694 MIMAT0003474 Mus musculus miR-694 14 27
mmu-miR-335-3p MIMAT0004704 Mus musculus miR-335-3p 14 27
hsa-miR-335-3p MIMAT0004703 Homo sapiens miR-335-3p 14 27
>pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgaaaat 8
||||||||
Sbjct: 1 atgaaaat 8
>pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgaaaat 8
||||||||
Sbjct: 1 atgaaaat 8
>gma-miR5379 MIMAT0021620 Glycine max miR5379
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgaaaat 8
||||||||
Sbjct: 1 atgaaaat 8
>mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgaaaat 8
||||||||
Sbjct: 1 atgaaaat 8
>chi-miR-335-3p MIMAT0036148 Capra hircus miR-335-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 8 atgaaaa 2
>gra-miR8743a MIMAT0034163 Gossypium raimondii miR8743a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaaa 7
|||||||
Sbjct: 2 atgaaaa 8
>gra-miR8743e MIMAT0034162 Gossypium raimondii miR8743e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaaa 7
|||||||
Sbjct: 2 atgaaaa 8
>gra-miR8743d MIMAT0034161 Gossypium raimondii miR8743d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaaa 7
|||||||
Sbjct: 2 atgaaaa 8
>gra-miR8743c MIMAT0034160 Gossypium raimondii miR8743c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaaa 7
|||||||
Sbjct: 2 atgaaaa 8
>mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 7 atgaaaa 1
>nta-miR6145a MIMAT0024731 Nicotiana tabacum miR6145a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgaaaat 8
|||||||
Sbjct: 8 tgaaaat 2
>mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaaa 7
|||||||
Sbjct: 2 atgaaaa 8
>dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster
miR-4946-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgaaaat 8
|||||||
Sbjct: 8 tgaaaat 2
>cin-miR-4143-3p MIMAT0016745 Ciona intestinalis miR-4143-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaaa 7
|||||||
Sbjct: 2 atgaaaa 8
>bmo-miR-2791 MIMAT0013689 Bombyx mori miR-2791
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 7 atgaaaa 1
>bmo-miR-2742 MIMAT0012620 Bombyx mori miR-2742
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 7 atgaaaa 1
>sme-miR-2160-1-3p MIMAT0011416 Schmidtea mediterranea
miR-2160-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 8 atgaaaa 2
>mml-miR-335-3p MIMAT0026853 Macaca mulatta miR-335-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 8 atgaaaa 2
>cel-miR-797-3p MIMAT0015241 Caenorhabditis elegans miR-797-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 7 atgaaaa 1
>mmu-miR-694 MIMAT0003474 Mus musculus miR-694
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgaaaat 8
|||||||
Sbjct: 2 tgaaaat 8
>mmu-miR-335-3p MIMAT0004704 Mus musculus miR-335-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 8 atgaaaa 2
>hsa-miR-335-3p MIMAT0004703 Homo sapiens miR-335-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaaa 7
|||||||
Sbjct: 8 atgaaaa 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 151
Number of extensions: 125
Number of successful extensions: 100
Number of sequences better than 100.0: 22
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)