BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv1-miR-m3-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b                       16   6.9  
pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a                       16   6.9  
gma-miR5379 MIMAT0021620 Glycine max miR5379                           16   6.9  
mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p                   16   6.9  
chi-miR-335-3p MIMAT0036148 Capra hircus miR-335-3p                    14      27
gra-miR8743a MIMAT0034163 Gossypium raimondii miR8743a                 14      27
gra-miR8743e MIMAT0034162 Gossypium raimondii miR8743e                 14      27
gra-miR8743d MIMAT0034161 Gossypium raimondii miR8743d                 14      27
gra-miR8743c MIMAT0034160 Gossypium raimondii miR8743c                 14      27
mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p             14      27
nta-miR6145a MIMAT0024731 Nicotiana tabacum miR6145a                   14      27
mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253                   14      27
dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster miR-4946-5p       14      27
cin-miR-4143-3p MIMAT0016745 Ciona intestinalis miR-4143-3p            14      27
bmo-miR-2791 MIMAT0013689 Bombyx mori miR-2791                         14      27
bmo-miR-2742 MIMAT0012620 Bombyx mori miR-2742                         14      27
sme-miR-2160-1-3p MIMAT0011416 Schmidtea mediterranea miR-2160-1-3p    14      27
mml-miR-335-3p MIMAT0026853 Macaca mulatta miR-335-3p                  14      27
cel-miR-797-3p MIMAT0015241 Caenorhabditis elegans miR-797-3p          14      27
mmu-miR-694 MIMAT0003474 Mus musculus miR-694                          14      27
mmu-miR-335-3p MIMAT0004704 Mus musculus miR-335-3p                    14      27
hsa-miR-335-3p MIMAT0004703 Homo sapiens miR-335-3p                    14      27
>pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atgaaaat 8
         ||||||||
Sbjct: 1 atgaaaat 8
>pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atgaaaat 8
         ||||||||
Sbjct: 1 atgaaaat 8
>gma-miR5379 MIMAT0021620 Glycine max miR5379
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atgaaaat 8
         ||||||||
Sbjct: 1 atgaaaat 8
>mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 atgaaaat 8
         ||||||||
Sbjct: 1 atgaaaat 8
>chi-miR-335-3p MIMAT0036148 Capra hircus miR-335-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 8 atgaaaa 2
>gra-miR8743a MIMAT0034163 Gossypium raimondii miR8743a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 2 atgaaaa 8
>gra-miR8743e MIMAT0034162 Gossypium raimondii miR8743e
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 2 atgaaaa 8
>gra-miR8743d MIMAT0034161 Gossypium raimondii miR8743d
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 2 atgaaaa 8
>gra-miR8743c MIMAT0034160 Gossypium raimondii miR8743c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 2 atgaaaa 8
>mtr-miR7698-5p MIMAT0029996 Medicago truncatula miR7698-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 7 atgaaaa 1
>nta-miR6145a MIMAT0024731 Nicotiana tabacum miR6145a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tgaaaat 8
         |||||||
Sbjct: 8 tgaaaat 2
>mtr-miR5253 MIMAT0021251 Medicago truncatula miR5253
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 2 atgaaaa 8
>dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster
         miR-4946-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tgaaaat 8
         |||||||
Sbjct: 8 tgaaaat 2
>cin-miR-4143-3p MIMAT0016745 Ciona intestinalis miR-4143-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 2 atgaaaa 8
>bmo-miR-2791 MIMAT0013689 Bombyx mori miR-2791
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 7 atgaaaa 1
>bmo-miR-2742 MIMAT0012620 Bombyx mori miR-2742
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 7 atgaaaa 1
>sme-miR-2160-1-3p MIMAT0011416 Schmidtea mediterranea
         miR-2160-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 8 atgaaaa 2
>mml-miR-335-3p MIMAT0026853 Macaca mulatta miR-335-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 8 atgaaaa 2
>cel-miR-797-3p MIMAT0015241 Caenorhabditis elegans miR-797-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 7 atgaaaa 1
>mmu-miR-694 MIMAT0003474 Mus musculus miR-694
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tgaaaat 8
         |||||||
Sbjct: 2 tgaaaat 8
>mmu-miR-335-3p MIMAT0004704 Mus musculus miR-335-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 8 atgaaaa 2
>hsa-miR-335-3p MIMAT0004703 Homo sapiens miR-335-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgaaaa 7
         |||||||
Sbjct: 8 atgaaaa 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 151
Number of extensions: 125
Number of successful extensions: 100
Number of sequences better than 100.0: 22
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)