BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-16-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bol-miR9408 MIMAT0035363 Brassica oleracea miR9408 14 20
sma-miR-8434-3p MIMAT0033573 Schistosoma mansoni miR-8434-3p 14 20
ppc-miR-8298-5p MIMAT0033113 Pristionchus pacificus miR-8298-5p 14 20
stu-miR8015-3p MIMAT0031198 Solanum tuberosum miR8015-3p 14 20
mmu-miR-7675-3p MIMAT0029859 Mus musculus miR-7675-3p 14 20
ghr-miR7504a MIMAT0029151 Gossypium hirsutum miR7504a 14 20
osa-miR5529 MIMAT0022164 Oryza sativa miR5529 14 20
dme-miR-4963-5p MIMAT0020185 Drosophila melanogaster miR-4963-5p 14 20
rlcv-miR-rL1-16-3p MIMAT0003448 Rhesus lymphocryptovirus miR-rL1... 14 20
gma-miR9738 MIMAT0036358 Glycine max miR9738 12 80
chi-miR-494 MIMAT0036255 Capra hircus miR-494 12 80
chi-miR-335-3p MIMAT0036148 Capra hircus miR-335-3p 12 80
bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p 12 80
dvi-miR-957-3p MIMAT0035578 Drosophila virilis miR-957-3p 12 80
efu-miR-494 MIMAT0035028 Eptesicus fuscus miR-494 12 80
efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286 12 80
efu-miR-9241 MIMAT0034857 Eptesicus fuscus miR-9241 12 80
gra-miR7504j MIMAT0034247 Gossypium raimondii miR7504j 12 80
gra-miR7504i MIMAT0034101 Gossypium raimondii miR7504i 12 80
ppc-miR-8295-5p MIMAT0033103 Pristionchus pacificus miR-8295-5p 12 80
ppc-miR-8293-3p MIMAT0033100 Pristionchus pacificus miR-8293-3p 12 80
ppc-miR-8278-5p MIMAT0033055 Pristionchus pacificus miR-8278-5p 12 80
stu-miR8020 MIMAT0030919 Solanum tuberosum miR8020 12 80
stu-miR1886g-3p MIMAT0031194 Solanum tuberosum miR1886g-3p 12 80
bdi-miR7723a-5p MIMAT0030172 Brachypodium distachyon miR7723a-5p 12 80
cbn-miR-7634 MIMAT0029677 Caenorhabditis brenneri miR-7634 12 80
hcmv-miR-US22-5p MIMAT0028165 Human cytomegalovirus miR-US22-5p 12 80
gga-miR-6617-3p MIMAT0025713 Gallus gallus miR-6617-3p 12 80
pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b 12 80
pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a 12 80
cca-miR6113 MIMAT0024552 Cynara cardunculus miR6113 12 80
ggo-miR-4738 MIMAT0024284 Gorilla gorilla miR-4738 12 80
ggo-miR-494 MIMAT0024160 Gorilla gorilla miR-494 12 80
ath-miR5997 MIMAT0023520 Arabidopsis thaliana miR5997 12 80
cin-miR-5604-5p MIMAT0022333 Ciona intestinalis miR-5604-5p 12 80
gma-miR5379 MIMAT0021620 Glycine max miR5379 12 80
hsa-miR-5096 MIMAT0020603 Homo sapiens miR-5096 12 80
gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p 12 80
hsa-miR-4738-3p MIMAT0019867 Homo sapiens miR-4738-3p 12 80
oar-miR-494-3p MIMAT0019268 Ovis aries miR-494-3p 12 80
tca-miR-3864-3p MIMAT0018813 Tribolium castaneum miR-3864-3p 12 80
tca-miR-3858-3p MIMAT0018783 Tribolium castaneum miR-3858-3p 12 80
aly-miR4222 MIMAT0017910 Arabidopsis lyrata miR4222 12 80
cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p 12 80
cin-miR-4000i-5p MIMAT0016442 Ciona intestinalis miR-4000i-5p 12 80
cin-miR-4000h-5p MIMAT0016440 Ciona intestinalis miR-4000h-5p 12 80
cin-miR-4000g-5p MIMAT0016438 Ciona intestinalis miR-4000g-5p 12 80
cin-miR-4000f-5p MIMAT0016436 Ciona intestinalis miR-4000f-5p 12 80
cin-miR-4000e-5p MIMAT0016434 Ciona intestinalis miR-4000e-5p 12 80
cin-miR-4000b-5p MIMAT0016432 Ciona intestinalis miR-4000b-5p 12 80
cin-miR-4000d-5p MIMAT0016428 Ciona intestinalis miR-4000d-5p 12 80
cin-miR-4000c-5p MIMAT0016426 Ciona intestinalis miR-4000c-5p 12 80
ppy-miR-494 MIMAT0015915 Pongo pygmaeus miR-494 12 80
mmu-miR-3074-2-3p MIMAT0014946 Mus musculus miR-3074-2-3p 12 80
hma-miR-3009 MIMAT0014677 Hydra magnipapillata miR-3009 12 80
tgu-miR-29b-2-5p MIMAT0014651 Taeniopygia guttata miR-29b-2-5p 12 80
cqu-miR-957 MIMAT0014369 Culex quinquefasciatus miR-957 12 80
aae-miR-957 MIMAT0014248 Aedes aegypti miR-957 12 80
eca-miR-494 MIMAT0013164 Equus caballus miR-494 12 80
dsi-miR-957 MIMAT0012498 Drosophila simulans miR-957 12 80
dps-miR-957-3p MIMAT0012230 Drosophila pseudoobscura miR-957-3p 12 80
sme-miR-2160-1-3p MIMAT0011416 Schmidtea mediterranea miR-2160-1-3p 12 80
aga-miR-957 MIMAT0010106 Anopheles gambiae miR-957 12 80
cfa-miR-494 MIMAT0009905 Canis familiaris miR-494 12 80
nve-miR-2041a-3p MIMAT0009805 Nematostella vectensis miR-2041a-3p 12 80
bta-miR-494 MIMAT0009334 Bos taurus miR-494 12 80
dya-miR-288 MIMAT0009094 Drosophila yakuba miR-288 12 80
dwi-miR-288 MIMAT0009050 Drosophila willistoni miR-288 12 80
dvi-miR-288 MIMAT0008952 Drosophila virilis miR-288 12 80
dsi-miR-288 MIMAT0008897 Drosophila simulans miR-288 12 80
dse-miR-288 MIMAT0008806 Drosophila sechellia miR-288 12 80
dpe-miR-288 MIMAT0008753 Drosophila persimilis miR-288 12 80
dmo-miR-288 MIMAT0008675 Drosophila mojavensis miR-288 12 80
dgr-miR-288 MIMAT0008600 Drosophila grimshawi miR-288 12 80
der-miR-288 MIMAT0008551 Drosophila erecta miR-288 12 80
dan-miR-288 MIMAT0008406 Drosophila ananassae miR-288 12 80
ptr-miR-494 MIMAT0008168 Pan troglodytes miR-494 12 80
mml-miR-494-3p MIMAT0006356 Macaca mulatta miR-494-3p 12 80
mml-miR-335-3p MIMAT0026853 Macaca mulatta miR-335-3p 12 80
odi-miR-1484 MIMAT0006037 Oikopleura dioica miR-1484 12 80
oan-miR-1422l MIMAT0006939 Ornithorhynchus anatinus miR-1422l 12 80
ppt-miR1075 MIMAT0005205 Physcomitrella patens miR1075 12 80
dme-miR-957-3p MIMAT0005470 Drosophila melanogaster miR-957-3p 12 80
mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p 12 80
rno-miR-494-3p MIMAT0003193 Rattus norvegicus miR-494-3p 12 80
mmu-miR-494-3p MIMAT0003182 Mus musculus miR-494-3p 12 80
hsa-miR-510-3p MIMAT0026613 Homo sapiens miR-510-3p 12 80
hsa-miR-494-3p MIMAT0002816 Homo sapiens miR-494-3p 12 80
mghv-miR-M1-6-3p MIMAT0001569 Mouse gammaherpesvirus miR-M1-6-3p 12 80
dps-miR-288 MIMAT0001252 Drosophila pseudoobscura miR-288 12 80
rno-miR-29b-1-5p MIMAT0005445 Rattus norvegicus miR-29b-1-5p 12 80
mmu-miR-335-3p MIMAT0004704 Mus musculus miR-335-3p 12 80
hsa-miR-335-3p MIMAT0004703 Homo sapiens miR-335-3p 12 80
dme-miR-288-3p MIMAT0000363 Drosophila melanogaster miR-288-3p 12 80
>bol-miR9408 MIMAT0035363 Brassica oleracea miR9408
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 7 atgaaac 1
>sma-miR-8434-3p MIMAT0033573 Schistosoma mansoni miR-8434-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 7 atgaaac 1
>ppc-miR-8298-5p MIMAT0033113 Pristionchus pacificus miR-8298-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 8 atgaaac 2
>stu-miR8015-3p MIMAT0031198 Solanum tuberosum miR8015-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 7 atgaaac 1
>mmu-miR-7675-3p MIMAT0029859 Mus musculus miR-7675-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 8 atgaaac 2
>ghr-miR7504a MIMAT0029151 Gossypium hirsutum miR7504a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaac 7
|||||||
Sbjct: 2 atgaaac 8
>osa-miR5529 MIMAT0022164 Oryza sativa miR5529
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 7 atgaaac 1
>dme-miR-4963-5p MIMAT0020185 Drosophila melanogaster
miR-4963-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgaaac 7
|||||||
Sbjct: 8 atgaaac 2
>rlcv-miR-rL1-16-3p MIMAT0003448 Rhesus lymphocryptovirus
miR-rL1-16-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgaaac 7
|||||||
Sbjct: 2 atgaaac 8
>gma-miR9738 MIMAT0036358 Glycine max miR9738
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>chi-miR-494 MIMAT0036255 Capra hircus miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>chi-miR-335-3p MIMAT0036148 Capra hircus miR-335-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 8 atgaaa 3
>bra-miR9408-3p MIMAT0035658 Brassica rapa miR9408-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dvi-miR-957-3p MIMAT0035578 Drosophila virilis miR-957-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>efu-miR-494 MIMAT0035028 Eptesicus fuscus miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>efu-miR-9286 MIMAT0034940 Eptesicus fuscus miR-9286
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>efu-miR-9241 MIMAT0034857 Eptesicus fuscus miR-9241
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 3 tgaaac 8
>gra-miR7504j MIMAT0034247 Gossypium raimondii miR7504j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 3 atgaaa 8
>gra-miR7504i MIMAT0034101 Gossypium raimondii miR7504i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 3 atgaaa 8
>ppc-miR-8295-5p MIMAT0033103 Pristionchus pacificus miR-8295-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>ppc-miR-8293-3p MIMAT0033100 Pristionchus pacificus miR-8293-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 1 atgaaa 6
>ppc-miR-8278-5p MIMAT0033055 Pristionchus pacificus miR-8278-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 8 tgaaac 3
>stu-miR8020 MIMAT0030919 Solanum tuberosum miR8020
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 8 atgaaa 3
>stu-miR1886g-3p MIMAT0031194 Solanum tuberosum miR1886g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>bdi-miR7723a-5p MIMAT0030172 Brachypodium distachyon
miR7723a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cbn-miR-7634 MIMAT0029677 Caenorhabditis brenneri miR-7634
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 6 tgaaac 1
>hcmv-miR-US22-5p MIMAT0028165 Human cytomegalovirus miR-US22-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 7 tgaaac 2
>gga-miR-6617-3p MIMAT0025713 Gallus gallus miR-6617-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 7 tgaaac 2
>pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 1 atgaaa 6
>pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 1 atgaaa 6
>cca-miR6113 MIMAT0024552 Cynara cardunculus miR6113
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 3 tgaaac 8
>ggo-miR-4738 MIMAT0024284 Gorilla gorilla miR-4738
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>ggo-miR-494 MIMAT0024160 Gorilla gorilla miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>ath-miR5997 MIMAT0023520 Arabidopsis thaliana miR5997
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-5604-5p MIMAT0022333 Ciona intestinalis miR-5604-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 8 tgaaac 3
>gma-miR5379 MIMAT0021620 Glycine max miR5379
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 1 atgaaa 6
>hsa-miR-5096 MIMAT0020603 Homo sapiens miR-5096
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 6 tgaaac 1
>gma-miR5041-5p MIMAT0021070 Glycine max miR5041-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>hsa-miR-4738-3p MIMAT0019867 Homo sapiens miR-4738-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>oar-miR-494-3p MIMAT0019268 Ovis aries miR-494-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>tca-miR-3864-3p MIMAT0018813 Tribolium castaneum miR-3864-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>tca-miR-3858-3p MIMAT0018783 Tribolium castaneum miR-3858-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>aly-miR4222 MIMAT0017910 Arabidopsis lyrata miR4222
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>cin-miR-4024-3p MIMAT0016540 Ciona intestinalis miR-4024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>cin-miR-4000i-5p MIMAT0016442 Ciona intestinalis miR-4000i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000h-5p MIMAT0016440 Ciona intestinalis miR-4000h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000g-5p MIMAT0016438 Ciona intestinalis miR-4000g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000f-5p MIMAT0016436 Ciona intestinalis miR-4000f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000e-5p MIMAT0016434 Ciona intestinalis miR-4000e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000b-5p MIMAT0016432 Ciona intestinalis miR-4000b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000d-5p MIMAT0016428 Ciona intestinalis miR-4000d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cin-miR-4000c-5p MIMAT0016426 Ciona intestinalis miR-4000c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>ppy-miR-494 MIMAT0015915 Pongo pygmaeus miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>mmu-miR-3074-2-3p MIMAT0014946 Mus musculus miR-3074-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 7 tgaaac 2
>hma-miR-3009 MIMAT0014677 Hydra magnipapillata miR-3009
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>tgu-miR-29b-2-5p MIMAT0014651 Taeniopygia guttata miR-29b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 8 tgaaac 3
>cqu-miR-957 MIMAT0014369 Culex quinquefasciatus miR-957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>aae-miR-957 MIMAT0014248 Aedes aegypti miR-957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>eca-miR-494 MIMAT0013164 Equus caballus miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>dsi-miR-957 MIMAT0012498 Drosophila simulans miR-957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>dps-miR-957-3p MIMAT0012230 Drosophila pseudoobscura miR-957-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>sme-miR-2160-1-3p MIMAT0011416 Schmidtea mediterranea
miR-2160-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 8 atgaaa 3
>aga-miR-957 MIMAT0010106 Anopheles gambiae miR-957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>cfa-miR-494 MIMAT0009905 Canis familiaris miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>nve-miR-2041a-3p MIMAT0009805 Nematostella vectensis
miR-2041a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>bta-miR-494 MIMAT0009334 Bos taurus miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>dya-miR-288 MIMAT0009094 Drosophila yakuba miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dwi-miR-288 MIMAT0009050 Drosophila willistoni miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dvi-miR-288 MIMAT0008952 Drosophila virilis miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dsi-miR-288 MIMAT0008897 Drosophila simulans miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dse-miR-288 MIMAT0008806 Drosophila sechellia miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dpe-miR-288 MIMAT0008753 Drosophila persimilis miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dmo-miR-288 MIMAT0008675 Drosophila mojavensis miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dgr-miR-288 MIMAT0008600 Drosophila grimshawi miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>der-miR-288 MIMAT0008551 Drosophila erecta miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>dan-miR-288 MIMAT0008406 Drosophila ananassae miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>ptr-miR-494 MIMAT0008168 Pan troglodytes miR-494
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>mml-miR-494-3p MIMAT0006356 Macaca mulatta miR-494-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>mml-miR-335-3p MIMAT0026853 Macaca mulatta miR-335-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 8 atgaaa 3
>odi-miR-1484 MIMAT0006037 Oikopleura dioica miR-1484
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>oan-miR-1422l MIMAT0006939 Ornithorhynchus anatinus miR-1422l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>ppt-miR1075 MIMAT0005205 Physcomitrella patens miR1075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgaaac 7
||||||
Sbjct: 7 tgaaac 2
>dme-miR-957-3p MIMAT0005470 Drosophila melanogaster miR-957-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgaaa 6
||||||
Sbjct: 1 atgaaa 6
>rno-miR-494-3p MIMAT0003193 Rattus norvegicus miR-494-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>mmu-miR-494-3p MIMAT0003182 Mus musculus miR-494-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>hsa-miR-510-3p MIMAT0026613 Homo sapiens miR-510-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 3 tgaaac 8
>hsa-miR-494-3p MIMAT0002816 Homo sapiens miR-494-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>mghv-miR-M1-6-3p MIMAT0001569 Mouse gammaherpesvirus
miR-M1-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgaaac 7
||||||
Sbjct: 1 tgaaac 6
>dps-miR-288 MIMAT0001252 Drosophila pseudoobscura miR-288
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>rno-miR-29b-1-5p MIMAT0005445 Rattus norvegicus miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
>mmu-miR-335-3p MIMAT0004704 Mus musculus miR-335-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 8 atgaaa 3
>hsa-miR-335-3p MIMAT0004703 Homo sapiens miR-335-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 8 atgaaa 3
>dme-miR-288-3p MIMAT0000363 Drosophila melanogaster miR-288-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgaaa 6
||||||
Sbjct: 6 atgaaa 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 123
Number of extensions: 114
Number of successful extensions: 94
Number of sequences better than 100.0: 94
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 94
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
