BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7927e-3p MIMAT0030703 Panagrellus redivivus miR-7927e-3p 16 6.9
prd-miR-7927b-3p MIMAT0030645 Panagrellus redivivus miR-7927b-3p 16 6.9
prd-miR-7927d-3p MIMAT0030613 Panagrellus redivivus miR-7927d-3p 16 6.9
prd-miR-7927a-3p MIMAT0030547 Panagrellus redivivus miR-7927a-3p 16 6.9
blv-miR-B2-5p MIMAT0025860 Bovine leukemia miR-B2-5p 16 6.9
gga-miR-6562-3p MIMAT0025833 Gallus gallus miR-6562-3p 16 6.9
bta-miR-2917 MIMAT0012885 Bos taurus miR-2917 16 6.9
efu-miR-9189f MIMAT0034887 Eptesicus fuscus miR-9189f 14 27
eca-miR-8936 MIMAT0034465 Equus caballus miR-8936 14 27
gra-miR8713 MIMAT0034102 Gossypium raimondii miR8713 14 27
pxy-miR-8535-5p MIMAT0033783 Plutella xylostella miR-8535-5p 14 27
sma-miR-8403-3p MIMAT0033507 Schistosoma mansoni miR-8403-3p 14 27
ppc-miR-2238k-3p MIMAT0033038 Pristionchus pacificus miR-2238k-3p 14 27
ssa-miR-725-3p MIMAT0032674 Salmo salar miR-725-3p 14 27
ssa-miR-29b-2-5p MIMAT0032587 Salmo salar miR-29b-2-5p 14 27
tgu-miR-7643-5p MIMAT0029786 Taeniopygia guttata miR-7643-5p 14 27
ccr-miR-725 MIMAT0026312 Cyprinus carpio miR-725 14 27
hsa-miR-6857-3p MIMAT0027615 Homo sapiens miR-6857-3p 14 27
ptr-miR-3136 MIMAT0024064 Pan troglodytes miR-3136 14 27
osa-miR5789 MIMAT0023256 Oryza sativa miR5789 14 27
mmu-miR-5620-3p MIMAT0022368 Mus musculus miR-5620-3p 14 27
aca-miR-5460 MIMAT0022088 Anolis carolinensis miR-5460 14 27
mtr-miR5241c MIMAT0021237 Medicago truncatula miR5241c 14 27
mtr-miR5241b MIMAT0021236 Medicago truncatula miR5241b 14 27
mtr-miR5241a MIMAT0021235 Medicago truncatula miR5241a 14 27
hsa-miR-4704-3p MIMAT0019804 Homo sapiens miR-4704-3p 14 27
hsa-miR-4439 MIMAT0018957 Homo sapiens miR-4439 14 27
bmo-miR-3282 MIMAT0015468 Bombyx mori miR-3282 14 27
hsa-miR-3136-5p MIMAT0015003 Homo sapiens miR-3136-5p 14 27
oan-miR-1422p-5p MIMAT0007314 Ornithorhynchus anatinus miR-1422p-5p 14 27
dre-miR-725-3p MIMAT0003753 Danio rerio miR-725-3p 14 27
mmu-miR-707 MIMAT0003497 Mus musculus miR-707 14 27
mmu-miR-468-3p MIMAT0002109 Mus musculus miR-468-3p 14 27
zma-miR171c-3p MIMAT0001737 Zea mays miR171c-3p 14 27
>prd-miR-7927e-3p MIMAT0030703 Panagrellus redivivus
miR-7927e-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atgactga 8
||||||||
Sbjct: 8 atgactga 1
>prd-miR-7927b-3p MIMAT0030645 Panagrellus redivivus
miR-7927b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atgactga 8
||||||||
Sbjct: 8 atgactga 1
>prd-miR-7927d-3p MIMAT0030613 Panagrellus redivivus
miR-7927d-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atgactga 8
||||||||
Sbjct: 8 atgactga 1
>prd-miR-7927a-3p MIMAT0030547 Panagrellus redivivus
miR-7927a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atgactga 8
||||||||
Sbjct: 8 atgactga 1
>blv-miR-B2-5p MIMAT0025860 Bovine leukemia miR-B2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgactga 8
||||||||
Sbjct: 1 atgactga 8
>gga-miR-6562-3p MIMAT0025833 Gallus gallus miR-6562-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atgactga 8
||||||||
Sbjct: 8 atgactga 1
>bta-miR-2917 MIMAT0012885 Bos taurus miR-2917
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgactga 8
||||||||
Sbjct: 1 atgactga 8
>efu-miR-9189f MIMAT0034887 Eptesicus fuscus miR-9189f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 2 tgactga 8
>eca-miR-8936 MIMAT0034465 Equus caballus miR-8936
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgactg 7
|||||||
Sbjct: 2 atgactg 8
>gra-miR8713 MIMAT0034102 Gossypium raimondii miR8713
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgactg 7
|||||||
Sbjct: 1 atgactg 7
>pxy-miR-8535-5p MIMAT0033783 Plutella xylostella miR-8535-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>sma-miR-8403-3p MIMAT0033507 Schistosoma mansoni miR-8403-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgactg 7
|||||||
Sbjct: 1 atgactg 7
>ppc-miR-2238k-3p MIMAT0033038 Pristionchus pacificus
miR-2238k-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgactg 7
|||||||
Sbjct: 2 atgactg 8
>ssa-miR-725-3p MIMAT0032674 Salmo salar miR-725-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgactga 8
|||||||
Sbjct: 8 tgactga 2
>ssa-miR-29b-2-5p MIMAT0032587 Salmo salar miR-29b-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>tgu-miR-7643-5p MIMAT0029786 Taeniopygia guttata miR-7643-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 2 tgactga 8
>ccr-miR-725 MIMAT0026312 Cyprinus carpio miR-725
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgactga 8
|||||||
Sbjct: 8 tgactga 2
>hsa-miR-6857-3p MIMAT0027615 Homo sapiens miR-6857-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>ptr-miR-3136 MIMAT0024064 Pan troglodytes miR-3136
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 2 tgactga 8
>osa-miR5789 MIMAT0023256 Oryza sativa miR5789
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>mmu-miR-5620-3p MIMAT0022368 Mus musculus miR-5620-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgactg 7
|||||||
Sbjct: 8 atgactg 2
>aca-miR-5460 MIMAT0022088 Anolis carolinensis miR-5460
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>mtr-miR5241c MIMAT0021237 Medicago truncatula miR5241c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>mtr-miR5241b MIMAT0021236 Medicago truncatula miR5241b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>mtr-miR5241a MIMAT0021235 Medicago truncatula miR5241a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
>hsa-miR-4704-3p MIMAT0019804 Homo sapiens miR-4704-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgactga 8
|||||||
Sbjct: 7 tgactga 1
>hsa-miR-4439 MIMAT0018957 Homo sapiens miR-4439
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 2 tgactga 8
>bmo-miR-3282 MIMAT0015468 Bombyx mori miR-3282
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgactg 7
|||||||
Sbjct: 7 atgactg 1
>hsa-miR-3136-5p MIMAT0015003 Homo sapiens miR-3136-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 2 tgactga 8
>oan-miR-1422p-5p MIMAT0007314 Ornithorhynchus anatinus
miR-1422p-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgactga 8
|||||||
Sbjct: 7 tgactga 1
>dre-miR-725-3p MIMAT0003753 Danio rerio miR-725-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgactga 8
|||||||
Sbjct: 8 tgactga 2
>mmu-miR-707 MIMAT0003497 Mus musculus miR-707
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgactg 7
|||||||
Sbjct: 7 atgactg 1
>mmu-miR-468-3p MIMAT0002109 Mus musculus miR-468-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgactg 7
|||||||
Sbjct: 2 atgactg 8
>zma-miR171c-3p MIMAT0001737 Zea mays miR171c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgactga 8
|||||||
Sbjct: 1 tgactga 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 238
Number of extensions: 197
Number of successful extensions: 175
Number of sequences better than 100.0: 34
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 34
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
