BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9034 MIMAT0034576 Equus caballus miR-9034 14 20
atr-miR8578.2 MIMAT0033862 Amborella trichopoda miR8578.2 14 20
pxy-miR-279b-5p MIMAT0033819 Plutella xylostella miR-279b-5p 14 20
bmo-miR-279d-5p MIMAT0013606 Bombyx mori miR-279d-5p 14 20
ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p 12 80
gsa-miR-279-5p MIMAT0035244 Gyrodactylus salaris miR-279-5p 12 80
efu-miR-9186j MIMAT0035143 Eptesicus fuscus miR-9186j 12 80
efu-miR-9223b MIMAT0034820 Eptesicus fuscus miR-9223b 12 80
eca-miR-9141 MIMAT0034693 Equus caballus miR-9141 12 80
eca-miR-9073 MIMAT0034618 Equus caballus miR-9073 12 80
ppc-miR-8247-5p MIMAT0032958 Pristionchus pacificus miR-8247-5p 12 80
stu-miR397-5p MIMAT0031341 Solanum tuberosum miR397-5p 12 80
stu-miR5304-3p MIMAT0031236 Solanum tuberosum miR5304-3p 12 80
stu-miR8011b-5p MIMAT0031218 Solanum tuberosum miR8011b-5p 12 80
bdi-miR397b-5p MIMAT0030065 Brachypodium distachyon miR397b-5p 12 80
mes-miR397 MIMAT0029279 Manihot esculenta miR397 12 80
gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p 12 80
mml-miR-7192-5p MIMAT0028342 Macaca mulatta miR-7192-5p 12 80
mml-miR-6790-5p MIMAT0028288 Macaca mulatta miR-6790-5p 12 80
mml-miR-7169-3p MIMAT0028273 Macaca mulatta miR-7169-3p 12 80
mdm-miR7127b MIMAT0026065 Malus domestica miR7127b 12 80
mdm-miR7127a MIMAT0026064 Malus domestica miR7127a 12 80
mmu-miR-6956-5p MIMAT0027812 Mus musculus miR-6956-5p 12 80
hsa-miR-6758-3p MIMAT0027417 Homo sapiens miR-6758-3p 12 80
prv-miR-LLT5 MIMAT0025308 Pseudorabies virus miR-LLT5 12 80
hvu-miR6182 MIMAT0024806 Hordeum vulgare miR6182 12 80
nta-miR6151i MIMAT0024750 Nicotiana tabacum miR6151i 12 80
nta-miR6151h MIMAT0024749 Nicotiana tabacum miR6151h 12 80
nta-miR6151g MIMAT0024748 Nicotiana tabacum miR6151g 12 80
nta-miR6151f MIMAT0024747 Nicotiana tabacum miR6151f 12 80
nta-miR397 MIMAT0024711 Nicotiana tabacum miR397 12 80
lus-miR397a MIMAT0027170 Linum usitatissimum miR397a 12 80
bta-miR-574 MIMAT0024577 Bos taurus miR-574 12 80
stu-miR482d-5p MIMAT0031162 Solanum tuberosum miR482d-5p 12 80
hco-miR-5927 MIMAT0023408 Haemonchus contortus miR-5927 12 80
asu-miR-36b-5p MIMAT0021441 Ascaris suum miR-36b-5p 12 80
ath-miR5026 MIMAT0020532 Arabidopsis thaliana miR5026 12 80
hsa-miR-4765 MIMAT0019916 Homo sapiens miR-4765 12 80
hsa-miR-4745-5p MIMAT0019878 Homo sapiens miR-4745-5p 12 80
tca-miR-3815-3p MIMAT0018655 Tribolium castaneum miR-3815-3p 12 80
hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659 12 80
cin-miR-4190-5p MIMAT0016808 Ciona intestinalis miR-4190-5p 12 80
cin-miR-4165-3p MIMAT0016773 Ciona intestinalis miR-4165-3p 12 80
aly-miR3447-3p MIMAT0017730 Arabidopsis lyrata miR3447-3p 12 80
mmu-miR-3071-5p MIMAT0014850 Mus musculus miR-3071-5p 12 80
rno-miR-201-5p MIMAT0012846 Rattus norvegicus miR-201-5p 12 80
mtr-miR2642 MIMAT0013410 Medicago truncatula miR2642 12 80
dsi-miR-983a-3p MIMAT0012526 Drosophila simulans miR-983a-3p 12 80
dps-miR-2515 MIMAT0012300 Drosophila pseudoobscura miR-2515 12 80
dme-miR-307b-5p MIMAT0012194 Drosophila melanogaster miR-307b-5p 12 80
mmu-miR-1948-5p MIMAT0017344 Mus musculus miR-1948-5p 12 80
dvi-miR-279-5p MIMAT0032047 Drosophila virilis miR-279-5p 12 80
sly-miR397 MIMAT0007928 Solanum lycopersicum miR397 12 80
hsa-miR-1909-5p MIMAT0007882 Homo sapiens miR-1909-5p 12 80
mml-miR-512-5p MIMAT0006371 Macaca mulatta miR-512-5p 12 80
hsa-miR-1236-5p MIMAT0022945 Homo sapiens miR-1236-5p 12 80
mmu-miR-1194 MIMAT0005852 Mus musculus miR-1194 12 80
dme-miR-997-3p MIMAT0020897 Drosophila melanogaster miR-997-3p 12 80
mmu-miR-574-5p MIMAT0004893 Mus musculus miR-574-5p 12 80
hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p 12 80
hsa-miR-512-5p MIMAT0002822 Homo sapiens miR-512-5p 12 80
mghv-miR-M1-8-5p MIMAT0001572 Mouse gammaherpesvirus miR-M1-8-5p 12 80
ath-miR405d MIMAT0001008 Arabidopsis thaliana miR405d 12 80
ath-miR405b MIMAT0001007 Arabidopsis thaliana miR405b 12 80
ath-miR405a MIMAT0001006 Arabidopsis thaliana miR405a 12 80
>eca-miR-9034 MIMAT0034576 Equus caballus miR-9034
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgagtg 7
|||||||
Sbjct: 8 atgagtg 2
>atr-miR8578.2 MIMAT0033862 Amborella trichopoda miR8578.2
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgagtg 7
|||||||
Sbjct: 2 atgagtg 8
>pxy-miR-279b-5p MIMAT0033819 Plutella xylostella miR-279b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgagtg 7
|||||||
Sbjct: 2 atgagtg 8
>bmo-miR-279d-5p MIMAT0013606 Bombyx mori miR-279d-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgagtg 7
|||||||
Sbjct: 2 atgagtg 8
>ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>gsa-miR-279-5p MIMAT0035244 Gyrodactylus salaris miR-279-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>efu-miR-9186j MIMAT0035143 Eptesicus fuscus miR-9186j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>efu-miR-9223b MIMAT0034820 Eptesicus fuscus miR-9223b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>eca-miR-9141 MIMAT0034693 Equus caballus miR-9141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>eca-miR-9073 MIMAT0034618 Equus caballus miR-9073
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>ppc-miR-8247-5p MIMAT0032958 Pristionchus pacificus miR-8247-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>stu-miR397-5p MIMAT0031341 Solanum tuberosum miR397-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>stu-miR5304-3p MIMAT0031236 Solanum tuberosum miR5304-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>stu-miR8011b-5p MIMAT0031218 Solanum tuberosum miR8011b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 6 atgagt 1
>bdi-miR397b-5p MIMAT0030065 Brachypodium distachyon miR397b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>mes-miR397 MIMAT0029279 Manihot esculenta miR397
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>mml-miR-7192-5p MIMAT0028342 Macaca mulatta miR-7192-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 7 tgagtg 2
>mml-miR-6790-5p MIMAT0028288 Macaca mulatta miR-6790-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>mml-miR-7169-3p MIMAT0028273 Macaca mulatta miR-7169-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 1 atgagt 6
>mdm-miR7127b MIMAT0026065 Malus domestica miR7127b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 8 atgagt 3
>mdm-miR7127a MIMAT0026064 Malus domestica miR7127a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 8 atgagt 3
>mmu-miR-6956-5p MIMAT0027812 Mus musculus miR-6956-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>hsa-miR-6758-3p MIMAT0027417 Homo sapiens miR-6758-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 6 atgagt 1
>prv-miR-LLT5 MIMAT0025308 Pseudorabies virus miR-LLT5
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>hvu-miR6182 MIMAT0024806 Hordeum vulgare miR6182
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>nta-miR6151i MIMAT0024750 Nicotiana tabacum miR6151i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>nta-miR6151h MIMAT0024749 Nicotiana tabacum miR6151h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>nta-miR6151g MIMAT0024748 Nicotiana tabacum miR6151g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>nta-miR6151f MIMAT0024747 Nicotiana tabacum miR6151f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>nta-miR397 MIMAT0024711 Nicotiana tabacum miR397
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>lus-miR397a MIMAT0027170 Linum usitatissimum miR397a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>bta-miR-574 MIMAT0024577 Bos taurus miR-574
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>stu-miR482d-5p MIMAT0031162 Solanum tuberosum miR482d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>hco-miR-5927 MIMAT0023408 Haemonchus contortus miR-5927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 8 tgagtg 3
>asu-miR-36b-5p MIMAT0021441 Ascaris suum miR-36b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>ath-miR5026 MIMAT0020532 Arabidopsis thaliana miR5026
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 6 atgagt 1
>hsa-miR-4765 MIMAT0019916 Homo sapiens miR-4765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>hsa-miR-4745-5p MIMAT0019878 Homo sapiens miR-4745-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>tca-miR-3815-3p MIMAT0018655 Tribolium castaneum miR-3815-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>cin-miR-4190-5p MIMAT0016808 Ciona intestinalis miR-4190-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>cin-miR-4165-3p MIMAT0016773 Ciona intestinalis miR-4165-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>aly-miR3447-3p MIMAT0017730 Arabidopsis lyrata miR3447-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>mmu-miR-3071-5p MIMAT0014850 Mus musculus miR-3071-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 6 atgagt 1
>rno-miR-201-5p MIMAT0012846 Rattus norvegicus miR-201-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 6 tgagtg 1
>mtr-miR2642 MIMAT0013410 Medicago truncatula miR2642
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 1 atgagt 6
>dsi-miR-983a-3p MIMAT0012526 Drosophila simulans miR-983a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 1 atgagt 6
>dps-miR-2515 MIMAT0012300 Drosophila pseudoobscura miR-2515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>dme-miR-307b-5p MIMAT0012194 Drosophila melanogaster
miR-307b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 7 tgagtg 2
>mmu-miR-1948-5p MIMAT0017344 Mus musculus miR-1948-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>dvi-miR-279-5p MIMAT0032047 Drosophila virilis miR-279-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>sly-miR397 MIMAT0007928 Solanum lycopersicum miR397
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 3 tgagtg 8
>hsa-miR-1909-5p MIMAT0007882 Homo sapiens miR-1909-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>mml-miR-512-5p MIMAT0006371 Macaca mulatta miR-512-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 6 tgagtg 1
>hsa-miR-1236-5p MIMAT0022945 Homo sapiens miR-1236-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>mmu-miR-1194 MIMAT0005852 Mus musculus miR-1194
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 3 atgagt 8
>dme-miR-997-3p MIMAT0020897 Drosophila melanogaster miR-997-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgagt 6
||||||
Sbjct: 8 atgagt 3
>mmu-miR-574-5p MIMAT0004893 Mus musculus miR-574-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgagtg 7
||||||
Sbjct: 1 tgagtg 6
>hsa-miR-512-5p MIMAT0002822 Homo sapiens miR-512-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 6 tgagtg 1
>mghv-miR-M1-8-5p MIMAT0001572 Mouse gammaherpesvirus
miR-M1-8-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgagtg 7
||||||
Sbjct: 8 tgagtg 3
>ath-miR405d MIMAT0001008 Arabidopsis thaliana miR405d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 1 atgagt 6
>ath-miR405b MIMAT0001007 Arabidopsis thaliana miR405b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 1 atgagt 6
>ath-miR405a MIMAT0001006 Arabidopsis thaliana miR405a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgagt 6
||||||
Sbjct: 1 atgagt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 97
Number of extensions: 93
Number of successful extensions: 65
Number of sequences better than 100.0: 65
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 65
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)