BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s16
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR530b MIMAT0035527 Brachypodium distachyon miR530b 14 27
bdi-miR530a MIMAT0035526 Brachypodium distachyon miR530a 14 27
gsa-miR-277b-3p MIMAT0035311 Gyrodactylus salaris miR-277b-3p 14 27
gsa-miR-277a-3p MIMAT0035297 Gyrodactylus salaris miR-277a-3p 14 27
cfa-miR-8871 MIMAT0034368 Canis familiaris miR-8871 14 27
pxy-miR-277 MIMAT0033785 Plutella xylostella miR-277 14 27
sma-miR-8407-3p MIMAT0033519 Schistosoma mansoni miR-8407-3p 14 27
sma-miR-8406-5p MIMAT0033516 Schistosoma mansoni miR-8406-5p 14 27
str-miR-8390-3p MIMAT0033449 Strongyloides ratti miR-8390-3p 14 27
bma-miR-232 MIMAT0031741 Brugia malayi miR-232 14 27
prd-miR-277-3p MIMAT0030811 Panagrellus redivivus miR-277-3p 14 27
prd-miR-7889-5p MIMAT0030550 Panagrellus redivivus miR-7889-5p 14 27
prd-miR-7876-5p MIMAT0030504 Panagrellus redivivus miR-7876-5p 14 27
cbn-miR-232 MIMAT0029755 Caenorhabditis brenneri miR-232 14 27
mes-miR530b MIMAT0029299 Manihot esculenta miR530b 14 27
mes-miR530a MIMAT0029298 Manihot esculenta miR530a 14 27
mdo-miR-7341-3p MIMAT0028693 Monodelphis domestica miR-7341-3p 14 27
cme-miR530a MIMAT0026182 Cucumis melo miR530a 14 27
cme-miR530b MIMAT0026104 Cucumis melo miR530b 14 27
htu-miR530 MIMAT0025521 Helianthus tuberosus miR530 14 27
hme-miR-277 MIMAT0024959 Heliconius melpomene miR-277 14 27
ppe-miR6266c MIMAT0027334 Prunus persica miR6266c 14 27
ppe-miR6266b MIMAT0027324 Prunus persica miR6266b 14 27
ppe-miR6266a MIMAT0027290 Prunus persica miR6266a 14 27
lus-miR530b MIMAT0027169 Linum usitatissimum miR530b 14 27
lus-miR530a MIMAT0027162 Linum usitatissimum miR530a 14 27
mse-miR-277 MIMAT0024443 Manduca sexta miR-277 14 27
hco-miR-277 MIMAT0023377 Haemonchus contortus miR-277 14 27
gma-miR530e MIMAT0023209 Glycine max miR530e 14 27
gma-miR530d MIMAT0023199 Glycine max miR530d 14 27
gma-miR530c MIMAT0023197 Glycine max miR530c 14 27
mtr-miR530 MIMAT0023156 Medicago truncatula miR530 14 27
hsa-miR-5700 MIMAT0022493 Homo sapiens miR-5700 14 27
gma-miR530b MIMAT0022463 Glycine max miR530b 14 27
asu-miR-5366-5p MIMAT0021594 Ascaris suum miR-5366-5p 14 27
gma-miR530a MIMAT0021003 Glycine max miR530a 14 27
emu-miR-4989 MIMAT0020275 Echinococcus multilocularis miR-4989 14 27
emu-miR-277 MIMAT0020272 Echinococcus multilocularis miR-277 14 27
egr-miR-4989 MIMAT0020250 Echinococcus granulosus miR-4989 14 27
egr-miR-277 MIMAT0020247 Echinococcus granulosus miR-277 14 27
dme-miR-4967-5p MIMAT0020192 Drosophila melanogaster miR-4967-5p 14 27
tcc-miR530b MIMAT0020447 Theobroma cacao miR530b 14 27
tcc-miR530a MIMAT0020446 Theobroma cacao miR530a 14 27
csi-miR530b MIMAT0018483 Citrus sinensis miR530b 14 27
csi-miR530a MIMAT0018482 Citrus sinensis miR530a 14 27
nlo-miR-277 MIMAT0018431 Nasonia longicornis miR-277 14 27
ngi-miR-277 MIMAT0018400 Nasonia giraulti miR-277 14 27
tca-miR-3872-3p MIMAT0018837 Tribolium castaneum miR-3872-3p 14 27
sja-miR-277 MIMAT0016269 Schistosoma japonicum miR-277 14 27
ppy-miR-586 MIMAT0016028 Pongo pygmaeus miR-586 14 27
nvi-miR-277 MIMAT0015683 Nasonia vitripennis miR-277 14 27
api-miR-277 MIMAT0014722 Acyrthosiphon pisum miR-277 14 27
cqu-miR-277 MIMAT0014371 Culex quinquefasciatus miR-277 14 27
aae-miR-277-3p MIMAT0014211 Aedes aegypti miR-277-3p 14 27
cte-miR-277b MIMAT0013575 Capitella teleta miR-277b 14 27
cte-miR-277a MIMAT0013531 Capitella teleta miR-277a 14 27
aqc-miR530 MIMAT0012593 Aquilegia caerulea miR530 14 27
ppc-miR-232 MIMAT0011699 Pristionchus pacificus miR-232 14 27
crm-miR-232 MIMAT0011516 Caenorhabditis remanei miR-232 14 27
nve-miR-2049-5p MIMAT0009822 Nematostella vectensis miR-2049-5p 14 27
dya-miR-277 MIMAT0009099 Drosophila yakuba miR-277 14 27
dwi-miR-277 MIMAT0009040 Drosophila willistoni miR-277 14 27
dvi-miR-277-3p MIMAT0008946 Drosophila virilis miR-277-3p 14 27
dsi-miR-277 MIMAT0008850 Drosophila simulans miR-277 14 27
dse-miR-277 MIMAT0008794 Drosophila sechellia miR-277 14 27
dpe-miR-277 MIMAT0008702 Drosophila persimilis miR-277 14 27
dmo-miR-277 MIMAT0008685 Drosophila mojavensis miR-277 14 27
dgr-miR-277 MIMAT0008556 Drosophila grimshawi miR-277 14 27
der-miR-277 MIMAT0008517 Drosophila erecta miR-277 14 27
dan-miR-277 MIMAT0008407 Drosophila ananassae miR-277 14 27
tca-miR-277-3p MIMAT0008382 Tribolium castaneum miR-277-3p 14 27
ptr-miR-586 MIMAT0008258 Pan troglodytes miR-586 14 27
ptc-miR530b MIMAT0005998 Populus trichocarpa miR530b 14 27
ptc-miR530a MIMAT0005997 Populus trichocarpa miR530a 14 27
sme-miR-277d-3p MIMAT0004024 Schmidtea mediterranea miR-277d-3p 14 27
sme-miR-277c-3p MIMAT0004010 Schmidtea mediterranea miR-277c-3p 14 27
sme-miR-277b-3p MIMAT0004009 Schmidtea mediterranea miR-277b-3p 14 27
sme-miR-277a-3p MIMAT0004007 Schmidtea mediterranea miR-277a-3p 14 27
sme-miR-124b-5p MIMAT0012113 Schmidtea mediterranea miR-124b-5p 14 27
bmo-miR-277-3p MIMAT0004203 Bombyx mori miR-277-3p 14 27
hsa-miR-586 MIMAT0003252 Homo sapiens miR-586 14 27
osa-miR530-5p MIMAT0006787 Oryza sativa miR530-5p 14 27
aga-miR-277 MIMAT0001510 Anopheles gambiae miR-277 14 27
ame-miR-277 MIMAT0001481 Apis mellifera miR-277 14 27
dps-miR-277 MIMAT0001241 Drosophila pseudoobscura miR-277 14 27
cbr-miR-232 MIMAT0000497 Caenorhabditis briggsae miR-232 14 27
dme-miR-277-3p MIMAT0000338 Drosophila melanogaster miR-277-3p 14 27
cel-miR-232-3p MIMAT0000287 Caenorhabditis elegans miR-232-3p 14 27
>bdi-miR530b MIMAT0035527 Brachypodium distachyon miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>bdi-miR530a MIMAT0035526 Brachypodium distachyon miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>gsa-miR-277b-3p MIMAT0035311 Gyrodactylus salaris miR-277b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>gsa-miR-277a-3p MIMAT0035297 Gyrodactylus salaris miR-277a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>cfa-miR-8871 MIMAT0034368 Canis familiaris miR-8871
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcatt 7
|||||||
Sbjct: 8 atgcatt 2
>pxy-miR-277 MIMAT0033785 Plutella xylostella miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>sma-miR-8407-3p MIMAT0033519 Schistosoma mansoni miR-8407-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>sma-miR-8406-5p MIMAT0033516 Schistosoma mansoni miR-8406-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>str-miR-8390-3p MIMAT0033449 Strongyloides ratti miR-8390-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>bma-miR-232 MIMAT0031741 Brugia malayi miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>prd-miR-277-3p MIMAT0030811 Panagrellus redivivus miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>prd-miR-7889-5p MIMAT0030550 Panagrellus redivivus miR-7889-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcatt 7
|||||||
Sbjct: 8 atgcatt 2
>prd-miR-7876-5p MIMAT0030504 Panagrellus redivivus miR-7876-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcatt 7
|||||||
Sbjct: 7 atgcatt 1
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgcatt 7
|||||||
Sbjct: 2 atgcatt 8
>cbn-miR-232 MIMAT0029755 Caenorhabditis brenneri miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>mes-miR530b MIMAT0029299 Manihot esculenta miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>mes-miR530a MIMAT0029298 Manihot esculenta miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>mdo-miR-7341-3p MIMAT0028693 Monodelphis domestica miR-7341-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 7 tgcattt 1
>cme-miR530a MIMAT0026182 Cucumis melo miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>cme-miR530b MIMAT0026104 Cucumis melo miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>htu-miR530 MIMAT0025521 Helianthus tuberosus miR530
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>hme-miR-277 MIMAT0024959 Heliconius melpomene miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ppe-miR6266c MIMAT0027334 Prunus persica miR6266c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ppe-miR6266b MIMAT0027324 Prunus persica miR6266b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ppe-miR6266a MIMAT0027290 Prunus persica miR6266a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>lus-miR530b MIMAT0027169 Linum usitatissimum miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>lus-miR530a MIMAT0027162 Linum usitatissimum miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>mse-miR-277 MIMAT0024443 Manduca sexta miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>hco-miR-277 MIMAT0023377 Haemonchus contortus miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>gma-miR530e MIMAT0023209 Glycine max miR530e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>gma-miR530d MIMAT0023199 Glycine max miR530d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>gma-miR530c MIMAT0023197 Glycine max miR530c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>mtr-miR530 MIMAT0023156 Medicago truncatula miR530
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>hsa-miR-5700 MIMAT0022493 Homo sapiens miR-5700
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcatt 7
|||||||
Sbjct: 8 atgcatt 2
>gma-miR530b MIMAT0022463 Glycine max miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>asu-miR-5366-5p MIMAT0021594 Ascaris suum miR-5366-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>gma-miR530a MIMAT0021003 Glycine max miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>emu-miR-4989 MIMAT0020275 Echinococcus multilocularis miR-4989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>emu-miR-277 MIMAT0020272 Echinococcus multilocularis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>egr-miR-4989 MIMAT0020250 Echinococcus granulosus miR-4989
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>egr-miR-277 MIMAT0020247 Echinococcus granulosus miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dme-miR-4967-5p MIMAT0020192 Drosophila melanogaster
miR-4967-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>tcc-miR530b MIMAT0020447 Theobroma cacao miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>tcc-miR530a MIMAT0020446 Theobroma cacao miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>csi-miR530b MIMAT0018483 Citrus sinensis miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>csi-miR530a MIMAT0018482 Citrus sinensis miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>nlo-miR-277 MIMAT0018431 Nasonia longicornis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ngi-miR-277 MIMAT0018400 Nasonia giraulti miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>tca-miR-3872-3p MIMAT0018837 Tribolium castaneum miR-3872-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>sja-miR-277 MIMAT0016269 Schistosoma japonicum miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ppy-miR-586 MIMAT0016028 Pongo pygmaeus miR-586
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgcatt 7
|||||||
Sbjct: 2 atgcatt 8
>nvi-miR-277 MIMAT0015683 Nasonia vitripennis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>api-miR-277 MIMAT0014722 Acyrthosiphon pisum miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>cqu-miR-277 MIMAT0014371 Culex quinquefasciatus miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>aae-miR-277-3p MIMAT0014211 Aedes aegypti miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>cte-miR-277b MIMAT0013575 Capitella teleta miR-277b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>cte-miR-277a MIMAT0013531 Capitella teleta miR-277a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>aqc-miR530 MIMAT0012593 Aquilegia caerulea miR530
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>ppc-miR-232 MIMAT0011699 Pristionchus pacificus miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>crm-miR-232 MIMAT0011516 Caenorhabditis remanei miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>nve-miR-2049-5p MIMAT0009822 Nematostella vectensis miR-2049-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dya-miR-277 MIMAT0009099 Drosophila yakuba miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dwi-miR-277 MIMAT0009040 Drosophila willistoni miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dvi-miR-277-3p MIMAT0008946 Drosophila virilis miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dsi-miR-277 MIMAT0008850 Drosophila simulans miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dse-miR-277 MIMAT0008794 Drosophila sechellia miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dpe-miR-277 MIMAT0008702 Drosophila persimilis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dmo-miR-277 MIMAT0008685 Drosophila mojavensis miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dgr-miR-277 MIMAT0008556 Drosophila grimshawi miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>der-miR-277 MIMAT0008517 Drosophila erecta miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dan-miR-277 MIMAT0008407 Drosophila ananassae miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>tca-miR-277-3p MIMAT0008382 Tribolium castaneum miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ptr-miR-586 MIMAT0008258 Pan troglodytes miR-586
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgcatt 7
|||||||
Sbjct: 2 atgcatt 8
>ptc-miR530b MIMAT0005998 Populus trichocarpa miR530b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>ptc-miR530a MIMAT0005997 Populus trichocarpa miR530a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>sme-miR-277d-3p MIMAT0004024 Schmidtea mediterranea miR-277d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>sme-miR-277c-3p MIMAT0004010 Schmidtea mediterranea miR-277c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>sme-miR-277b-3p MIMAT0004009 Schmidtea mediterranea miR-277b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>sme-miR-277a-3p MIMAT0004007 Schmidtea mediterranea miR-277a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>sme-miR-124b-5p MIMAT0012113 Schmidtea mediterranea miR-124b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>bmo-miR-277-3p MIMAT0004203 Bombyx mori miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>hsa-miR-586 MIMAT0003252 Homo sapiens miR-586
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgcatt 7
|||||||
Sbjct: 2 atgcatt 8
>osa-miR530-5p MIMAT0006787 Oryza sativa miR530-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcattt 8
|||||||
Sbjct: 1 tgcattt 7
>aga-miR-277 MIMAT0001510 Anopheles gambiae miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>ame-miR-277 MIMAT0001481 Apis mellifera miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dps-miR-277 MIMAT0001241 Drosophila pseudoobscura miR-277
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>cbr-miR-232 MIMAT0000497 Caenorhabditis briggsae miR-232
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>dme-miR-277-3p MIMAT0000338 Drosophila melanogaster miR-277-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
>cel-miR-232-3p MIMAT0000287 Caenorhabditis elegans miR-232-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgcattt 8
|||||||
Sbjct: 8 tgcattt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 422
Number of extensions: 333
Number of successful extensions: 253
Number of sequences better than 100.0: 88
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 89
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
