BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-ov2-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bra-miR408-3p MIMAT0035684 Brassica rapa miR408-3p 14 27
stu-miR169f-3p MIMAT0031370 Solanum tuberosum miR169f-3p 14 27
cca-miR6116-5p MIMAT0024562 Cynara cardunculus miR6116-5p 14 27
osa-miR5071 MIMAT0020551 Oryza sativa miR5071 14 27
rno-miR-3580-5p MIMAT0017868 Rattus norvegicus miR-3580-5p 14 27
gga-miR-1632-5p MIMAT0007504 Gallus gallus miR-1632-5p 14 27
mdv1-miR-M1-5p MIMAT0003920 Mareks disease miR-M1-5p 14 27
ptc-miR169n-3p MIMAT0022899 Populus trichocarpa miR169n-3p 14 27
>bra-miR408-3p MIMAT0035684 Brassica rapa miR408-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcttgt 8
|||||||
Sbjct: 1 tgcttgt 7
>stu-miR169f-3p MIMAT0031370 Solanum tuberosum miR169f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcttg 7
|||||||
Sbjct: 8 atgcttg 2
>cca-miR6116-5p MIMAT0024562 Cynara cardunculus miR6116-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgcttg 7
|||||||
Sbjct: 2 atgcttg 8
>osa-miR5071 MIMAT0020551 Oryza sativa miR5071
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcttg 7
|||||||
Sbjct: 8 atgcttg 2
>rno-miR-3580-5p MIMAT0017868 Rattus norvegicus miR-3580-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcttgt 8
|||||||
Sbjct: 1 tgcttgt 7
>gga-miR-1632-5p MIMAT0007504 Gallus gallus miR-1632-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcttgt 8
|||||||
Sbjct: 1 tgcttgt 7
>mdv1-miR-M1-5p MIMAT0003920 Mareks disease miR-M1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgcttgt 8
|||||||
Sbjct: 1 tgcttgt 7
>ptc-miR169n-3p MIMAT0022899 Populus trichocarpa miR169n-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgcttg 7
|||||||
Sbjct: 8 atgcttg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 129
Number of extensions: 121
Number of successful extensions: 107
Number of sequences better than 100.0: 8
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
