BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mcmv-miR-m23-2
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdo-miR-7306-5p MIMAT0028606 Monodelphis domestica miR-7306-5p 16 6.9
mcmv-miR-M23-2-3p MIMAT0005545 Mouse cytomegalovirus miR-M23-2-3p 16 6.9
efu-miR-4667 MIMAT0034985 Eptesicus fuscus miR-4667 14 27
eca-miR-8952 MIMAT0034481 Equus caballus miR-8952 14 27
gra-miR7486d MIMAT0034035 Gossypium raimondii miR7486d 14 27
mmu-miR-7069-5p MIMAT0028044 Mus musculus miR-7069-5p 14 27
mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p 14 27
mmu-miR-6897-5p MIMAT0027694 Mus musculus miR-6897-5p 14 27
hsa-miR-6848-5p MIMAT0027596 Homo sapiens miR-6848-5p 14 27
hsa-miR-6846-5p MIMAT0027592 Homo sapiens miR-6846-5p 14 27
prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8 14 27
gma-miR482e MIMAT0023227 Glycine max miR482e 14 27
gma-miR482d-5p MIMAT0021671 Glycine max miR482d-5p 14 27
gma-miR482b-5p MIMAT0018286 Glycine max miR482b-5p 14 27
bta-miR-2454-5p MIMAT0012035 Bos taurus miR-2454-5p 14 27
bta-miR-1777a MIMAT0012032 Bos taurus miR-1777a 14 27
bta-miR-2433 MIMAT0012005 Bos taurus miR-2433 14 27
>mdo-miR-7306-5p MIMAT0028606 Monodelphis domestica miR-7306-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgggggc 8
||||||||
Sbjct: 1 atgggggc 8
>mcmv-miR-M23-2-3p MIMAT0005545 Mouse cytomegalovirus
miR-M23-2-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgggggc 8
||||||||
Sbjct: 1 atgggggc 8
>efu-miR-4667 MIMAT0034985 Eptesicus fuscus miR-4667
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
>eca-miR-8952 MIMAT0034481 Equus caballus miR-8952
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgggggc 8
|||||||
Sbjct: 8 tgggggc 2
>gra-miR7486d MIMAT0034035 Gossypium raimondii miR7486d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
>mmu-miR-7069-5p MIMAT0028044 Mus musculus miR-7069-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 2 tgggggc 8
>mmu-miR-7023-5p MIMAT0027950 Mus musculus miR-7023-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggggg 7
|||||||
Sbjct: 1 atggggg 7
>mmu-miR-6897-5p MIMAT0027694 Mus musculus miR-6897-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
>hsa-miR-6848-5p MIMAT0027596 Homo sapiens miR-6848-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
>hsa-miR-6846-5p MIMAT0027592 Homo sapiens miR-6846-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
>prv-miR-LLT8 MIMAT0025311 Pseudorabies virus miR-LLT8
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 2 tgggggc 8
>gma-miR482e MIMAT0023227 Glycine max miR482e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggggg 7
|||||||
Sbjct: 2 atggggg 8
>gma-miR482d-5p MIMAT0021671 Glycine max miR482d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggggg 7
|||||||
Sbjct: 2 atggggg 8
>gma-miR482b-5p MIMAT0018286 Glycine max miR482b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atggggg 7
|||||||
Sbjct: 2 atggggg 8
>bta-miR-2454-5p MIMAT0012035 Bos taurus miR-2454-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 2 tgggggc 8
>bta-miR-1777a MIMAT0012032 Bos taurus miR-1777a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
>bta-miR-2433 MIMAT0012005 Bos taurus miR-2433
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgggggc 8
|||||||
Sbjct: 1 tgggggc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 159
Number of extensions: 140
Number of successful extensions: 98
Number of sequences better than 100.0: 17
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
