BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
iltv-miR-I4 MIMAT0012727 Infectious laryngotracheitis miR-I4 16 6.9
rno-miR-466b-4-3p MIMAT0037262 Rattus norvegicus miR-466b-4-3p 14 27
oha-let-7f-2-3p MIMAT0036638 Ophiophagus hannah let-7f-2-3p 14 27
oha-let-7d-3p MIMAT0036637 Ophiophagus hannah let-7d-3p 14 27
oha-let-7b-3p MIMAT0036635 Ophiophagus hannah let-7b-3p 14 27
oha-let-7c-2-3p MIMAT0036632 Ophiophagus hannah let-7c-2-3p 14 27
tch-let-7a-3p MIMAT0036484 Tupaia chinensis let-7a-3p 14 27
chi-miR-98-3p MIMAT0036311 Capra hircus miR-98-3p 14 27
chi-let-7f-3p MIMAT0035891 Capra hircus let-7f-3p 14 27
chi-let-7b-3p MIMAT0035883 Capra hircus let-7b-3p 14 27
chi-let-7a-3p MIMAT0035881 Capra hircus let-7a-3p 14 27
ssa-let-7e-3p MIMAT0032706 Salmo salar let-7e-3p 14 27
ssa-let-7a-5-3p MIMAT0032692 Salmo salar let-7a-5-3p 14 27
ssa-let-7a-4-3p MIMAT0032691 Salmo salar let-7a-4-3p 14 27
ssa-let-7a-3-3p MIMAT0032690 Salmo salar let-7a-3-3p 14 27
ssa-let-7h-3p MIMAT0032273 Salmo salar let-7h-3p 14 27
ssa-let-7g-3p MIMAT0032271 Salmo salar let-7g-3p 14 27
ssa-let-7f-3p MIMAT0032269 Salmo salar let-7f-3p 14 27
aja-miR-3596 MIMAT0031134 Artibeus jamaicensis miR-3596 14 27
pol-let-7a-3p MIMAT0025417 Paralichthys olivaceus let-7a-3p 14 27
pol-let-7b-3p MIMAT0025415 Paralichthys olivaceus let-7b-3p 14 27
ola-let-7a-3p MIMAT0022550 Oryzias latipes let-7a-3p 14 27
cin-miR-5612-3p MIMAT0022352 Ciona intestinalis miR-5612-3p 14 27
aca-let-7f-2-3p MIMAT0021705 Anolis carolinensis let-7f-2-3p 14 27
aca-let-7f-1-3p MIMAT0021704 Anolis carolinensis let-7f-1-3p 14 27
aca-let-7d-3p MIMAT0021700 Anolis carolinensis let-7d-3p 14 27
aca-let-7b-3p MIMAT0021695 Anolis carolinensis let-7b-3p 14 27
aca-let-7a-3p MIMAT0021693 Anolis carolinensis let-7a-3p 14 27
dme-miR-4961-3p MIMAT0020182 Drosophila melanogaster miR-4961-3p 14 27
rno-miR-3596c MIMAT0017877 Rattus norvegicus miR-3596c 14 27
rno-miR-3596d MIMAT0017823 Rattus norvegicus miR-3596d 14 27
ppy-miR-1284 MIMAT0016206 Pongo pygmaeus miR-1284 14 27
ppy-miR-568 MIMAT0016012 Pongo pygmaeus miR-568 14 27
mmu-miR-466n-3p MIMAT0014894 Mus musculus miR-466n-3p 14 27
mmu-miR-669d-2-3p MIMAT0014884 Mus musculus miR-669d-2-3p 14 27
tgu-let-7d-3p MIMAT0026992 Taeniopygia guttata let-7d-3p 14 27
tgu-let-7f-3p MIMAT0026988 Taeniopygia guttata let-7f-3p 14 27
tgu-let-7a-4-3p MIMAT0031086 Taeniopygia guttata let-7a-4-3p 14 27
tgu-let-7a-1-3p MIMAT0031085 Taeniopygia guttata let-7a-1-3p 14 27
tgu-let-7e-3p MIMAT0026982 Taeniopygia guttata let-7e-3p 14 27
tgu-let-7b-3p MIMAT0026975 Taeniopygia guttata let-7b-3p 14 27
eca-miR-568 MIMAT0013095 Equus caballus miR-568 14 27
rno-miR-568 MIMAT0012832 Rattus norvegicus miR-568 14 27
cfa-miR-568 MIMAT0009914 Canis familiaris miR-568 14 27
mmu-miR-669m-3p MIMAT0009419 Mus musculus miR-669m-3p 14 27
mmu-miR-669l-3p MIMAT0017345 Mus musculus miR-669l-3p 14 27
bta-miR-568 MIMAT0009350 Bos taurus miR-568 14 27
ptr-miR-568 MIMAT0008246 Pan troglodytes miR-568 14 27
ptr-miR-1284 MIMAT0008003 Pan troglodytes miR-1284 14 27
mml-miR-568 MIMAT0006431 Macaca mulatta miR-568 14 27
mml-let-7f-3p MIMAT0026793 Macaca mulatta let-7f-3p 14 27
mml-let-7b-3p MIMAT0026790 Macaca mulatta let-7b-3p 14 27
mml-let-7a-3p MIMAT0026789 Macaca mulatta let-7a-3p 14 27
cin-let-7d-3p MIMAT0015250 Ciona intestinalis let-7d-3p 14 27
oan-let-7f-1-3p MIMAT0007180 Ornithorhynchus anatinus let-7f-1-3p 14 27
oan-let-7d-3p MIMAT0007235 Ornithorhynchus anatinus let-7d-3p 14 27
oan-let-7f-2-3p MIMAT0009171 Ornithorhynchus anatinus let-7f-2-3p 14 27
oan-let-7e-3p MIMAT0006985 Ornithorhynchus anatinus let-7e-3p 14 27
oan-let-7b-3p MIMAT0006898 Ornithorhynchus anatinus let-7b-3p 14 27
hsa-miR-1284 MIMAT0005941 Homo sapiens miR-1284 14 27
mmu-miR-467g MIMAT0005854 Mus musculus miR-467g 14 27
mmu-miR-669d-3p MIMAT0017324 Mus musculus miR-669d-3p 14 27
mmu-miR-467e-3p MIMAT0005294 Mus musculus miR-467e-3p 14 27
rno-miR-466c-3p MIMAT0017287 Rattus norvegicus miR-466c-3p 14 27
rno-miR-466b-2-3p MIMAT0017286 Rattus norvegicus miR-466b-2-3p 14 27
mmu-miR-466d-3p MIMAT0004931 Mus musculus miR-466d-3p 14 27
mmu-miR-568 MIMAT0004892 Mus musculus miR-568 14 27
mmu-miR-467d-3p MIMAT0004887 Mus musculus miR-467d-3p 14 27
mmu-miR-467c-3p MIMAT0017275 Mus musculus miR-467c-3p 14 27
mmu-miR-466e-3p MIMAT0004880 Mus musculus miR-466e-3p 14 27
mmu-miR-297c-3p MIMAT0004866 Mus musculus miR-297c-3p 14 27
mmu-miR-297a-3p MIMAT0004864 Mus musculus miR-297a-3p 14 27
bta-let-7a-3p MIMAT0004330 Bos taurus let-7a-3p 14 27
mdo-let-7f-1-3p MIMAT0026702 Monodelphis domestica let-7f-1-3p 14 27
mdo-let-7f-2-3p MIMAT0031040 Monodelphis domestica let-7f-2-3p 14 27
bmo-let-7-3p MIMAT0015221 Bombyx mori let-7-3p 14 27
mmu-miR-297b-3p MIMAT0004827 Mus musculus miR-297b-3p 14 27
mmu-miR-467b-3p MIMAT0003478 Mus musculus miR-467b-3p 14 27
hsa-miR-568 MIMAT0003232 Homo sapiens miR-568 14 27
mmu-miR-466a-3p MIMAT0002107 Mus musculus miR-466a-3p 14 27
gga-let-7k-3p MIMAT0026543 Gallus gallus let-7k-3p 14 27
gga-let-7j-3p MIMAT0026542 Gallus gallus let-7j-3p 14 27
gga-let-7f-3p MIMAT0026528 Gallus gallus let-7f-3p 14 27
gga-let-7a-3p MIMAT0026491 Gallus gallus let-7a-3p 14 27
rno-miR-98-3p MIMAT0017111 Rattus norvegicus miR-98-3p 14 27
rno-let-7f-2-3p MIMAT0017090 Rattus norvegicus let-7f-2-3p 14 27
rno-let-7f-1-3p MIMAT0017089 Rattus norvegicus let-7f-1-3p 14 27
rno-let-7c-2-3p MIMAT0017088 Rattus norvegicus let-7c-2-3p 14 27
rno-let-7b-3p MIMAT0004705 Rattus norvegicus let-7b-3p 14 27
rno-let-7a-1-3p MIMAT0017085 Rattus norvegicus let-7a-1-3p 14 27
mmu-miR-98-3p MIMAT0017023 Mus musculus miR-98-3p 14 27
mmu-let-7f-2-3p MIMAT0017017 Mus musculus let-7f-2-3p 14 27
mmu-let-7f-1-3p MIMAT0004623 Mus musculus let-7f-1-3p 14 27
mmu-let-7c-2-3p MIMAT0005439 Mus musculus let-7c-2-3p 14 27
mmu-let-7b-3p MIMAT0004621 Mus musculus let-7b-3p 14 27
mmu-let-7a-1-3p MIMAT0004620 Mus musculus let-7a-1-3p 14 27
dme-let-7-3p MIMAT0020830 Drosophila melanogaster let-7-3p 14 27
hsa-miR-98-3p MIMAT0022842 Homo sapiens miR-98-3p 14 27
hsa-let-7f-2-3p MIMAT0004487 Homo sapiens let-7f-2-3p 14 27
hsa-let-7f-1-3p MIMAT0004486 Homo sapiens let-7f-1-3p 14 27
hsa-let-7b-3p MIMAT0004482 Homo sapiens let-7b-3p 14 27
hsa-let-7a-3p MIMAT0004481 Homo sapiens let-7a-3p 14 27
>iltv-miR-I4 MIMAT0012727 Infectious laryngotracheitis miR-I4
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 atgtatag 8
||||||||
Sbjct: 1 atgtatag 8
>rno-miR-466b-4-3p MIMAT0037262 Rattus norvegicus miR-466b-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>oha-let-7f-2-3p MIMAT0036638 Ophiophagus hannah let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oha-let-7d-3p MIMAT0036637 Ophiophagus hannah let-7d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oha-let-7b-3p MIMAT0036635 Ophiophagus hannah let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oha-let-7c-2-3p MIMAT0036632 Ophiophagus hannah let-7c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>tch-let-7a-3p MIMAT0036484 Tupaia chinensis let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>chi-miR-98-3p MIMAT0036311 Capra hircus miR-98-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>chi-let-7f-3p MIMAT0035891 Capra hircus let-7f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>chi-let-7b-3p MIMAT0035883 Capra hircus let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>chi-let-7a-3p MIMAT0035881 Capra hircus let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7e-3p MIMAT0032706 Salmo salar let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7a-5-3p MIMAT0032692 Salmo salar let-7a-5-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7a-4-3p MIMAT0032691 Salmo salar let-7a-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7a-3-3p MIMAT0032690 Salmo salar let-7a-3-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7h-3p MIMAT0032273 Salmo salar let-7h-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7g-3p MIMAT0032271 Salmo salar let-7g-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ssa-let-7f-3p MIMAT0032269 Salmo salar let-7f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>aja-miR-3596 MIMAT0031134 Artibeus jamaicensis miR-3596
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>pol-let-7a-3p MIMAT0025417 Paralichthys olivaceus let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>pol-let-7b-3p MIMAT0025415 Paralichthys olivaceus let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ola-let-7a-3p MIMAT0022550 Oryzias latipes let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>cin-miR-5612-3p MIMAT0022352 Ciona intestinalis miR-5612-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>aca-let-7f-2-3p MIMAT0021705 Anolis carolinensis let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>aca-let-7f-1-3p MIMAT0021704 Anolis carolinensis let-7f-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>aca-let-7d-3p MIMAT0021700 Anolis carolinensis let-7d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>aca-let-7b-3p MIMAT0021695 Anolis carolinensis let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>aca-let-7a-3p MIMAT0021693 Anolis carolinensis let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>dme-miR-4961-3p MIMAT0020182 Drosophila melanogaster
miR-4961-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 2 atgtata 8
>rno-miR-3596c MIMAT0017877 Rattus norvegicus miR-3596c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 8 tgtatag 2
>rno-miR-3596d MIMAT0017823 Rattus norvegicus miR-3596d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>ppy-miR-1284 MIMAT0016206 Pongo pygmaeus miR-1284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 8 tgtatag 2
>ppy-miR-568 MIMAT0016012 Pongo pygmaeus miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>mmu-miR-466n-3p MIMAT0014894 Mus musculus miR-466n-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-669d-2-3p MIMAT0014884 Mus musculus miR-669d-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>tgu-let-7d-3p MIMAT0026992 Taeniopygia guttata let-7d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>tgu-let-7f-3p MIMAT0026988 Taeniopygia guttata let-7f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>tgu-let-7a-4-3p MIMAT0031086 Taeniopygia guttata let-7a-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>tgu-let-7a-1-3p MIMAT0031085 Taeniopygia guttata let-7a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>tgu-let-7e-3p MIMAT0026982 Taeniopygia guttata let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>tgu-let-7b-3p MIMAT0026975 Taeniopygia guttata let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>eca-miR-568 MIMAT0013095 Equus caballus miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>rno-miR-568 MIMAT0012832 Rattus norvegicus miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>cfa-miR-568 MIMAT0009914 Canis familiaris miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>mmu-miR-669m-3p MIMAT0009419 Mus musculus miR-669m-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>mmu-miR-669l-3p MIMAT0017345 Mus musculus miR-669l-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>bta-miR-568 MIMAT0009350 Bos taurus miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>ptr-miR-568 MIMAT0008246 Pan troglodytes miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>ptr-miR-1284 MIMAT0008003 Pan troglodytes miR-1284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 8 tgtatag 2
>mml-miR-568 MIMAT0006431 Macaca mulatta miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>mml-let-7f-3p MIMAT0026793 Macaca mulatta let-7f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mml-let-7b-3p MIMAT0026790 Macaca mulatta let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mml-let-7a-3p MIMAT0026789 Macaca mulatta let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>cin-let-7d-3p MIMAT0015250 Ciona intestinalis let-7d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oan-let-7f-1-3p MIMAT0007180 Ornithorhynchus anatinus
let-7f-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oan-let-7d-3p MIMAT0007235 Ornithorhynchus anatinus let-7d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oan-let-7f-2-3p MIMAT0009171 Ornithorhynchus anatinus
let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oan-let-7e-3p MIMAT0006985 Ornithorhynchus anatinus let-7e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>oan-let-7b-3p MIMAT0006898 Ornithorhynchus anatinus let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>hsa-miR-1284 MIMAT0005941 Homo sapiens miR-1284
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 8 tgtatag 2
>mmu-miR-467g MIMAT0005854 Mus musculus miR-467g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-669d-3p MIMAT0017324 Mus musculus miR-669d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-467e-3p MIMAT0005294 Mus musculus miR-467e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>rno-miR-466c-3p MIMAT0017287 Rattus norvegicus miR-466c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>rno-miR-466b-2-3p MIMAT0017286 Rattus norvegicus miR-466b-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>mmu-miR-466d-3p MIMAT0004931 Mus musculus miR-466d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-568 MIMAT0004892 Mus musculus miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>mmu-miR-467d-3p MIMAT0004887 Mus musculus miR-467d-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>mmu-miR-467c-3p MIMAT0017275 Mus musculus miR-467c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>mmu-miR-466e-3p MIMAT0004880 Mus musculus miR-466e-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-297c-3p MIMAT0004866 Mus musculus miR-297c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-297a-3p MIMAT0004864 Mus musculus miR-297a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>bta-let-7a-3p MIMAT0004330 Bos taurus let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mdo-let-7f-1-3p MIMAT0026702 Monodelphis domestica let-7f-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mdo-let-7f-2-3p MIMAT0031040 Monodelphis domestica let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>bmo-let-7-3p MIMAT0015221 Bombyx mori let-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgtatag 8
|||||||
Sbjct: 2 tgtatag 8
>mmu-miR-297b-3p MIMAT0004827 Mus musculus miR-297b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>mmu-miR-467b-3p MIMAT0003478 Mus musculus miR-467b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 8 atgtata 2
>hsa-miR-568 MIMAT0003232 Homo sapiens miR-568
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtata 7
|||||||
Sbjct: 1 atgtata 7
>mmu-miR-466a-3p MIMAT0002107 Mus musculus miR-466a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgtata 7
|||||||
Sbjct: 7 atgtata 1
>gga-let-7k-3p MIMAT0026543 Gallus gallus let-7k-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>gga-let-7j-3p MIMAT0026542 Gallus gallus let-7j-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>gga-let-7f-3p MIMAT0026528 Gallus gallus let-7f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>gga-let-7a-3p MIMAT0026491 Gallus gallus let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>rno-miR-98-3p MIMAT0017111 Rattus norvegicus miR-98-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>rno-let-7f-2-3p MIMAT0017090 Rattus norvegicus let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>rno-let-7f-1-3p MIMAT0017089 Rattus norvegicus let-7f-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>rno-let-7c-2-3p MIMAT0017088 Rattus norvegicus let-7c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>rno-let-7b-3p MIMAT0004705 Rattus norvegicus let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>rno-let-7a-1-3p MIMAT0017085 Rattus norvegicus let-7a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mmu-miR-98-3p MIMAT0017023 Mus musculus miR-98-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mmu-let-7f-2-3p MIMAT0017017 Mus musculus let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mmu-let-7f-1-3p MIMAT0004623 Mus musculus let-7f-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mmu-let-7c-2-3p MIMAT0005439 Mus musculus let-7c-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mmu-let-7b-3p MIMAT0004621 Mus musculus let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>mmu-let-7a-1-3p MIMAT0004620 Mus musculus let-7a-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>dme-let-7-3p MIMAT0020830 Drosophila melanogaster let-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>hsa-miR-98-3p MIMAT0022842 Homo sapiens miR-98-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>hsa-let-7f-2-3p MIMAT0004487 Homo sapiens let-7f-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>hsa-let-7f-1-3p MIMAT0004486 Homo sapiens let-7f-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>hsa-let-7b-3p MIMAT0004482 Homo sapiens let-7b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
>hsa-let-7a-3p MIMAT0004481 Homo sapiens let-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgtatag 8
|||||||
Sbjct: 7 tgtatag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 312
Number of extensions: 209
Number of successful extensions: 189
Number of sequences better than 100.0: 102
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 102
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
