BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d20-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
str-miR-360-3p MIMAT0033461 Strongyloides ratti miR-360-3p 14 20
dev-miR-D20-5p MIMAT0028195 Duck enteritis miR-D20-5p 14 20
prd-miR-7938-5p MIMAT0030734 Panagrellus redivivus miR-7938-5p 12 80
osa-miR5795 MIMAT0023263 Oryza sativa miR5795 12 80
tca-miR-3864-5p MIMAT0018812 Tribolium castaneum miR-3864-5p 12 80
hsa-miR-3683 MIMAT0018111 Homo sapiens miR-3683 12 80
osa-miR2869 MIMAT0013816 Oryza sativa miR2869 12 80
bta-miR-2321 MIMAT0011848 Bos taurus miR-2321 12 80
aqu-miR-2018-5p MIMAT0009694 Amphimedon queenslandica miR-2018-5p 12 80
ath-miR868-5p MIMAT0020355 Arabidopsis thaliana miR868-5p 12 80
>str-miR-360-3p MIMAT0033461 Strongyloides ratti miR-360-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtcgg 7
|||||||
Sbjct: 1 atgtcgg 7
>dev-miR-D20-5p MIMAT0028195 Duck enteritis miR-D20-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgtcgg 7
|||||||
Sbjct: 2 atgtcgg 8
>prd-miR-7938-5p MIMAT0030734 Panagrellus redivivus miR-7938-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtcgg 7
||||||
Sbjct: 3 tgtcgg 8
>osa-miR5795 MIMAT0023263 Oryza sativa miR5795
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgtcg 6
||||||
Sbjct: 1 atgtcg 6
>tca-miR-3864-5p MIMAT0018812 Tribolium castaneum miR-3864-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgtcg 6
||||||
Sbjct: 8 atgtcg 3
>hsa-miR-3683 MIMAT0018111 Homo sapiens miR-3683
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atgtcg 6
||||||
Sbjct: 8 atgtcg 3
>osa-miR2869 MIMAT0013816 Oryza sativa miR2869
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tgtcgg 7
||||||
Sbjct: 8 tgtcgg 3
>bta-miR-2321 MIMAT0011848 Bos taurus miR-2321
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtcgg 7
||||||
Sbjct: 1 tgtcgg 6
>aqu-miR-2018-5p MIMAT0009694 Amphimedon queenslandica
miR-2018-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tgtcgg 7
||||||
Sbjct: 1 tgtcgg 6
>ath-miR868-5p MIMAT0020355 Arabidopsis thaliana miR868-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atgtcg 6
||||||
Sbjct: 3 atgtcg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 12
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
