BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-8-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

stu-miR8036-3p MIMAT0030946 Solanum tuberosum miR8036-3p               14      20
bdi-miR7753-5p MIMAT0030246 Brachypodium distachyon miR7753-5p         14      20
lja-miR7536b MIMAT0029362 Lotus japonicus miR7536b                     14      20
lja-miR7536a MIMAT0029361 Lotus japonicus miR7536a                     14      20
ghr-miR7485 MIMAT0029126 Gossypium hirsutum miR7485                    14      20
ppy-miR-3617 MIMAT0024372 Pongo pygmaeus miR-3617                      14      20
ggo-miR-641 MIMAT0024262 Gorilla gorilla miR-641                       14      20
hsa-miR-3617-5p MIMAT0017997 Homo sapiens miR-3617-5p                  14      20
api-miR-3056 MIMAT0014799 Acyrthosiphon pisum miR-3056                 14      20
mtr-miR2660 MIMAT0013466 Medicago truncatula miR2660                   14      20
sme-miR-87d-5p MIMAT0012136 Schmidtea mediterranea miR-87d-5p          14      20
ptr-miR-641 MIMAT0008295 Pan troglodytes miR-641                       14      20
dre-miR-723-3p MIMAT0003751 Danio rerio miR-723-3p                     14      20
hsa-miR-641 MIMAT0003311 Homo sapiens miR-641                          14      20
pxy-miR-8537b-3p MIMAT0033792 Plutella xylostella miR-8537b-3p         12      80
sma-miR-8474-5p MIMAT0033669 Schistosoma mansoni miR-8474-5p           12      80
cel-miR-8202-3p MIMAT0032818 Caenorhabditis elegans miR-8202-3p        12      80
ssa-miR-723-3p MIMAT0032670 Salmo salar miR-723-3p                     12      80
prd-miR-7951-3p MIMAT0030775 Panagrellus redivivus miR-7951-3p         12      80
ghr-miR7506 MIMAT0029153 Gossypium hirsutum miR7506                    12      80
mmu-miR-7116-5p MIMAT0028129 Mus musculus miR-7116-5p                  12      80
hsa-miR-6830-3p MIMAT0027561 Homo sapiens miR-6830-3p                  12      80
hsa-miR-6740-3p MIMAT0027382 Homo sapiens miR-6740-3p                  12      80
hme-miR-316 MIMAT0024978 Heliconius melpomene miR-316                  12      80
mse-miR-316 MIMAT0024434 Manduca sexta miR-316                         12      80
sbi-miR5570 MIMAT0022251 Sorghum bicolor miR5570                       12      80
hsa-miR-4711-3p MIMAT0019817 Homo sapiens miR-4711-3p                  12      80
hsa-miR-3913-3p MIMAT0019225 Homo sapiens miR-3913-3p                  12      80
tca-miR-316-5p MIMAT0018716 Tribolium castaneum miR-316-5p             12      80
ppy-miR-511 MIMAT0015936 Pongo pygmaeus miR-511                        12      80
ppy-miR-431 MIMAT0015887 Pongo pygmaeus miR-431                        12      80
bmo-miR-3270 MIMAT0015455 Bombyx mori miR-3270                         12      80
api-miR-316 MIMAT0014731 Acyrthosiphon pisum miR-316                   12      80
cqu-miR-316 MIMAT0014442 Culex quinquefasciatus miR-316                12      80
aae-miR-316 MIMAT0014317 Aedes aegypti miR-316                         12      80
eca-miR-431 MIMAT0013156 Equus caballus miR-431                        12      80
bmo-miR-316-5p MIMAT0013597 Bombyx mori miR-316-5p                     12      80
dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581                 12      80
dsi-miR-2578 MIMAT0012511 Drosophila simulans miR-2578                 12      80
ame-miR-316 MIMAT0010122 Apis mellifera miR-316                        12      80
nve-miR-2047-3p MIMAT0009819 Nematostella vectensis miR-2047-3p        12      80
bta-miR-431 MIMAT0009316 Bos taurus miR-431                            12      80
dya-miR-316 MIMAT0009080 Drosophila yakuba miR-316                     12      80
dwi-miR-309 MIMAT0009021 Drosophila willistoni miR-309                 12      80
dwi-miR-316 MIMAT0009000 Drosophila willistoni miR-316                 12      80
dvi-miR-316-5p MIMAT0008945 Drosophila virilis miR-316-5p              12      80
dsi-miR-316 MIMAT0008869 Drosophila simulans miR-316                   12      80
dse-miR-316 MIMAT0008818 Drosophila sechellia miR-316                  12      80
dpe-miR-316 MIMAT0008764 Drosophila persimilis miR-316                 12      80
dmo-miR-316 MIMAT0008627 Drosophila mojavensis miR-316                 12      80
dgr-miR-316 MIMAT0008591 Drosophila grimshawi miR-316                  12      80
der-miR-316 MIMAT0008496 Drosophila erecta miR-316                     12      80
dan-miR-316 MIMAT0008449 Drosophila ananassae miR-316                  12      80
ptr-miR-511 MIMAT0008179 Pan troglodytes miR-511                       12      80
ptr-miR-431 MIMAT0008145 Pan troglodytes miR-431                       12      80
mml-miR-511-5p MIMAT0006370 Macaca mulatta miR-511-5p                  12      80
mml-miR-431 MIMAT0006326 Macaca mulatta miR-431                        12      80
mmu-miR-669e-5p MIMAT0005853 Mus musculus miR-669e-5p                  12      80
rno-miR-743b-3p MIMAT0005280 Rattus norvegicus miR-743b-3p             12      80
mmu-miR-743b-3p MIMAT0004840 Mus musculus miR-743b-3p                  12      80
ath-miR863-5p MIMAT0004309 Arabidopsis thaliana miR863-5p              12      80
mmu-miR-743a-3p MIMAT0004238 Mus musculus miR-743a-3p                  12      80
mmu-miR-704 MIMAT0003494 Mus musculus miR-704                          12      80
gga-miR-429-5p MIMAT0026635 Gallus gallus miR-429-5p                   12      80
hsa-miR-550a-3p MIMAT0003257 Homo sapiens miR-550a-3p                  12      80
hsa-miR-511-5p MIMAT0002808 Homo sapiens miR-511-5p                    12      80
rno-miR-431 MIMAT0001626 Rattus norvegicus miR-431                     12      80
hsa-miR-431-5p MIMAT0001625 Homo sapiens miR-431-5p                    12      80
mmu-miR-431-5p MIMAT0001418 Mus musculus miR-431-5p                    12      80
oar-miR-431 MIMAT0001414 Ovis aries miR-431                            12      80
dps-miR-316 MIMAT0001262 Drosophila pseudoobscura miR-316              12      80
dme-miR-316-5p MIMAT0000408 Drosophila melanogaster miR-316-5p         12      80
>stu-miR8036-3p MIMAT0030946 Solanum tuberosum miR8036-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 2 atgtctt 8
>bdi-miR7753-5p MIMAT0030246 Brachypodium distachyon miR7753-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 1 atgtctt 7
>lja-miR7536b MIMAT0029362 Lotus japonicus miR7536b
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>lja-miR7536a MIMAT0029361 Lotus japonicus miR7536a
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>ghr-miR7485 MIMAT0029126 Gossypium hirsutum miR7485
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>ppy-miR-3617 MIMAT0024372 Pongo pygmaeus miR-3617
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>ggo-miR-641 MIMAT0024262 Gorilla gorilla miR-641
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>hsa-miR-3617-5p MIMAT0017997 Homo sapiens miR-3617-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>api-miR-3056 MIMAT0014799 Acyrthosiphon pisum miR-3056
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>mtr-miR2660 MIMAT0013466 Medicago truncatula miR2660
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>sme-miR-87d-5p MIMAT0012136 Schmidtea mediterranea miR-87d-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 2 atgtctt 8
>ptr-miR-641 MIMAT0008295 Pan troglodytes miR-641
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>dre-miR-723-3p MIMAT0003751 Danio rerio miR-723-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 7 atgtctt 1
>hsa-miR-641 MIMAT0003311 Homo sapiens miR-641
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atgtctt 7
         |||||||
Sbjct: 8 atgtctt 2
>pxy-miR-8537b-3p MIMAT0033792 Plutella xylostella miR-8537b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 6 atgtct 1
>sma-miR-8474-5p MIMAT0033669 Schistosoma mansoni miR-8474-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>cel-miR-8202-3p MIMAT0032818 Caenorhabditis elegans miR-8202-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 8 atgtct 3
>ssa-miR-723-3p MIMAT0032670 Salmo salar miR-723-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 6 atgtct 1
>prd-miR-7951-3p MIMAT0030775 Panagrellus redivivus miR-7951-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>ghr-miR7506 MIMAT0029153 Gossypium hirsutum miR7506
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 1 atgtct 6
>mmu-miR-7116-5p MIMAT0028129 Mus musculus miR-7116-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>hsa-miR-6830-3p MIMAT0027561 Homo sapiens miR-6830-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>hsa-miR-6740-3p MIMAT0027382 Homo sapiens miR-6740-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>hme-miR-316 MIMAT0024978 Heliconius melpomene miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>mse-miR-316 MIMAT0024434 Manduca sexta miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>sbi-miR5570 MIMAT0022251 Sorghum bicolor miR5570
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>hsa-miR-4711-3p MIMAT0019817 Homo sapiens miR-4711-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 3 tgtctt 8
>hsa-miR-3913-3p MIMAT0019225 Homo sapiens miR-3913-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 6 atgtct 1
>tca-miR-316-5p MIMAT0018716 Tribolium castaneum miR-316-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>ppy-miR-511 MIMAT0015936 Pongo pygmaeus miR-511
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 2 tgtctt 7
>ppy-miR-431 MIMAT0015887 Pongo pygmaeus miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>bmo-miR-3270 MIMAT0015455 Bombyx mori miR-3270
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>api-miR-316 MIMAT0014731 Acyrthosiphon pisum miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>cqu-miR-316 MIMAT0014442 Culex quinquefasciatus miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>aae-miR-316 MIMAT0014317 Aedes aegypti miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>eca-miR-431 MIMAT0013156 Equus caballus miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>bmo-miR-316-5p MIMAT0013597 Bombyx mori miR-316-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dsi-miR-2581 MIMAT0012518 Drosophila simulans miR-2581
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>dsi-miR-2578 MIMAT0012511 Drosophila simulans miR-2578
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>ame-miR-316 MIMAT0010122 Apis mellifera miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>nve-miR-2047-3p MIMAT0009819 Nematostella vectensis miR-2047-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 8 atgtct 3
>bta-miR-431 MIMAT0009316 Bos taurus miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dya-miR-316 MIMAT0009080 Drosophila yakuba miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dwi-miR-309 MIMAT0009021 Drosophila willistoni miR-309
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 7 tgtctt 2
>dwi-miR-316 MIMAT0009000 Drosophila willistoni miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dvi-miR-316-5p MIMAT0008945 Drosophila virilis miR-316-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dsi-miR-316 MIMAT0008869 Drosophila simulans miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dse-miR-316 MIMAT0008818 Drosophila sechellia miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dpe-miR-316 MIMAT0008764 Drosophila persimilis miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dmo-miR-316 MIMAT0008627 Drosophila mojavensis miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dgr-miR-316 MIMAT0008591 Drosophila grimshawi miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>der-miR-316 MIMAT0008496 Drosophila erecta miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dan-miR-316 MIMAT0008449 Drosophila ananassae miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>ptr-miR-511 MIMAT0008179 Pan troglodytes miR-511
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 2 tgtctt 7
>ptr-miR-431 MIMAT0008145 Pan troglodytes miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>mml-miR-511-5p MIMAT0006370 Macaca mulatta miR-511-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>mml-miR-431 MIMAT0006326 Macaca mulatta miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>mmu-miR-669e-5p MIMAT0005853 Mus musculus miR-669e-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>rno-miR-743b-3p MIMAT0005280 Rattus norvegicus miR-743b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>mmu-miR-743b-3p MIMAT0004840 Mus musculus miR-743b-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>ath-miR863-5p MIMAT0004309 Arabidopsis thaliana miR863-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 3 atgtct 8
>mmu-miR-743a-3p MIMAT0004238 Mus musculus miR-743a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 8 tgtctt 3
>mmu-miR-704 MIMAT0003494 Mus musculus miR-704
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 atgtct 6
         ||||||
Sbjct: 6 atgtct 1
>gga-miR-429-5p MIMAT0026635 Gallus gallus miR-429-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>hsa-miR-550a-3p MIMAT0003257 Homo sapiens miR-550a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>hsa-miR-511-5p MIMAT0002808 Homo sapiens miR-511-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 2 tgtctt 7
>rno-miR-431 MIMAT0001626 Rattus norvegicus miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>hsa-miR-431-5p MIMAT0001625 Homo sapiens miR-431-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>mmu-miR-431-5p MIMAT0001418 Mus musculus miR-431-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>oar-miR-431 MIMAT0001414 Ovis aries miR-431
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dps-miR-316 MIMAT0001262 Drosophila pseudoobscura miR-316
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
>dme-miR-316-5p MIMAT0000408 Drosophila melanogaster miR-316-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 tgtctt 7
         ||||||
Sbjct: 1 tgtctt 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 109
Number of extensions: 95
Number of successful extensions: 72
Number of sequences better than 100.0: 72
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 72
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)