BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s62
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
crm-miR-7603 MIMAT0029620 Caenorhabditis remanei miR-7603 14 27
sbi-miR6233-5p MIMAT0026448 Sorghum bicolor miR6233-5p 14 27
mtr-miR2670e MIMAT0021208 Medicago truncatula miR2670e 14 27
gma-miR4410 MIMAT0018329 Glycine max miR4410 14 27
vvi-miR3631d MIMAT0018034 Vitis vinifera miR3631d 14 27
vvi-miR3631c MIMAT0018033 Vitis vinifera miR3631c 14 27
vvi-miR3631b-5p MIMAT0018031 Vitis vinifera miR3631b-5p 14 27
vvi-miR3631a-5p MIMAT0018029 Vitis vinifera miR3631a-5p 14 27
bmo-miR-2752 MIMAT0012632 Bombyx mori miR-2752 14 27
bta-miR-2488 MIMAT0012084 Bos taurus miR-2488 14 27
osa-miR1873 MIMAT0007826 Oryza sativa miR1873 14 27
>crm-miR-7603 MIMAT0029620 Caenorhabditis remanei miR-7603
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgttgag 8
|||||||
Sbjct: 1 tgttgag 7
>sbi-miR6233-5p MIMAT0026448 Sorghum bicolor miR6233-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tgttgag 8
|||||||
Sbjct: 1 tgttgag 7
>mtr-miR2670e MIMAT0021208 Medicago truncatula miR2670e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgttgag 8
|||||||
Sbjct: 8 tgttgag 2
>gma-miR4410 MIMAT0018329 Glycine max miR4410
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgttga 7
|||||||
Sbjct: 2 atgttga 8
>vvi-miR3631d MIMAT0018034 Vitis vinifera miR3631d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgttga 7
|||||||
Sbjct: 2 atgttga 8
>vvi-miR3631c MIMAT0018033 Vitis vinifera miR3631c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgttga 7
|||||||
Sbjct: 2 atgttga 8
>vvi-miR3631b-5p MIMAT0018031 Vitis vinifera miR3631b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgttga 7
|||||||
Sbjct: 2 atgttga 8
>vvi-miR3631a-5p MIMAT0018029 Vitis vinifera miR3631a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgttga 7
|||||||
Sbjct: 2 atgttga 8
>bmo-miR-2752 MIMAT0012632 Bombyx mori miR-2752
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tgttgag 8
|||||||
Sbjct: 7 tgttgag 1
>bta-miR-2488 MIMAT0012084 Bos taurus miR-2488
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atgttga 7
|||||||
Sbjct: 1 atgttga 7
>osa-miR1873 MIMAT0007826 Oryza sativa miR1873
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atgttga 7
|||||||
Sbjct: 7 atgttga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 159
Number of extensions: 148
Number of successful extensions: 105
Number of sequences better than 100.0: 11
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
