BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s76
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-9398-3p MIMAT0035343 Gyrodactylus salaris miR-9398-3p 16 6.9
bra-miR403-3p MIMAT0035859 Brassica rapa miR403-3p 14 27
gra-miR8764 MIMAT0034198 Gossypium raimondii miR8764 14 27
atr-miR8592 MIMAT0033879 Amborella trichopoda miR8592 14 27
ssa-miR-737-3p MIMAT0032687 Salmo salar miR-737-3p 14 27
ppe-miR403 MIMAT0031511 Prunus persica miR403 14 27
aly-miR403b-3p MIMAT0031387 Arabidopsis lyrata miR403b-3p 14 27
hsa-miR-8061 MIMAT0030988 Homo sapiens miR-8061 14 27
ptc-miR403d MIMAT0030370 Populus trichocarpa miR403d 14 27
mes-miR403b MIMAT0029287 Manihot esculenta miR403b 14 27
mes-miR403a MIMAT0029286 Manihot esculenta miR403a 14 27
mdm-miR403b MIMAT0026012 Malus domestica miR403b 14 27
mdm-miR403a MIMAT0026011 Malus domestica miR403a 14 27
hpe-miR403a MIMAT0025520 Helianthus petiolaris miR403a 14 27
har-miR403a MIMAT0025519 Helianthus argophyllus miR403a 14 27
htu-miR403e MIMAT0025518 Helianthus tuberosus miR403e 14 27
htu-miR403d MIMAT0025517 Helianthus tuberosus miR403d 14 27
htu-miR403c MIMAT0025516 Helianthus tuberosus miR403c 14 27
htu-miR403b MIMAT0025515 Helianthus tuberosus miR403b 14 27
htu-miR403a MIMAT0025514 Helianthus tuberosus miR403a 14 27
bna-miR403 MIMAT0023644 Brassica napus miR403 14 27
gma-miR403b MIMAT0021614 Glycine max miR403b 14 27
gma-miR403a MIMAT0021613 Glycine max miR403a 14 27
tcc-miR403b MIMAT0020445 Theobroma cacao miR403b 14 27
tcc-miR403a MIMAT0020444 Theobroma cacao miR403a 14 27
hsa-miR-4760-5p MIMAT0019906 Homo sapiens miR-4760-5p 14 27
csi-miR403 MIMAT0018471 Citrus sinensis miR403 14 27
aly-miR403a-3p MIMAT0017586 Arabidopsis lyrata miR403a-3p 14 27
rco-miR403b MIMAT0014203 Ricinus communis miR403b 14 27
rco-miR403a MIMAT0014202 Ricinus communis miR403a 14 27
vvi-miR403f MIMAT0006574 Vitis vinifera miR403f 14 27
vvi-miR403e MIMAT0006573 Vitis vinifera miR403e 14 27
vvi-miR403d MIMAT0006572 Vitis vinifera miR403d 14 27
vvi-miR403c MIMAT0006571 Vitis vinifera miR403c 14 27
vvi-miR403b MIMAT0006570 Vitis vinifera miR403b 14 27
vvi-miR403a MIMAT0006569 Vitis vinifera miR403a 14 27
ptc-miR403c-3p MIMAT0003944 Populus trichocarpa miR403c-3p 14 27
ptc-miR403b MIMAT0002057 Populus trichocarpa miR403b 14 27
ptc-miR403a MIMAT0002056 Populus trichocarpa miR403a 14 27
ath-miR403-3p MIMAT0001004 Arabidopsis thaliana miR403-3p 14 27
>gsa-miR-9398-3p MIMAT0035343 Gyrodactylus salaris miR-9398-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 attagatt 8
||||||||
Sbjct: 1 attagatt 8
>bra-miR403-3p MIMAT0035859 Brassica rapa miR403-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>gra-miR8764 MIMAT0034198 Gossypium raimondii miR8764
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>atr-miR8592 MIMAT0033879 Amborella trichopoda miR8592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attagat 7
|||||||
Sbjct: 7 attagat 1
>ssa-miR-737-3p MIMAT0032687 Salmo salar miR-737-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttagatt 8
|||||||
Sbjct: 7 ttagatt 1
>ppe-miR403 MIMAT0031511 Prunus persica miR403
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>aly-miR403b-3p MIMAT0031387 Arabidopsis lyrata miR403b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>hsa-miR-8061 MIMAT0030988 Homo sapiens miR-8061
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 2 ttagatt 8
>ptc-miR403d MIMAT0030370 Populus trichocarpa miR403d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>mes-miR403b MIMAT0029287 Manihot esculenta miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>mes-miR403a MIMAT0029286 Manihot esculenta miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>mdm-miR403b MIMAT0026012 Malus domestica miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>mdm-miR403a MIMAT0026011 Malus domestica miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>hpe-miR403a MIMAT0025520 Helianthus petiolaris miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>har-miR403a MIMAT0025519 Helianthus argophyllus miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>htu-miR403e MIMAT0025518 Helianthus tuberosus miR403e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>htu-miR403d MIMAT0025517 Helianthus tuberosus miR403d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>htu-miR403c MIMAT0025516 Helianthus tuberosus miR403c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>htu-miR403b MIMAT0025515 Helianthus tuberosus miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>htu-miR403a MIMAT0025514 Helianthus tuberosus miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>bna-miR403 MIMAT0023644 Brassica napus miR403
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>gma-miR403b MIMAT0021614 Glycine max miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>gma-miR403a MIMAT0021613 Glycine max miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>tcc-miR403b MIMAT0020445 Theobroma cacao miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>tcc-miR403a MIMAT0020444 Theobroma cacao miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>hsa-miR-4760-5p MIMAT0019906 Homo sapiens miR-4760-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 2 ttagatt 8
>csi-miR403 MIMAT0018471 Citrus sinensis miR403
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>aly-miR403a-3p MIMAT0017586 Arabidopsis lyrata miR403a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>rco-miR403b MIMAT0014203 Ricinus communis miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>rco-miR403a MIMAT0014202 Ricinus communis miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>vvi-miR403f MIMAT0006574 Vitis vinifera miR403f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>vvi-miR403e MIMAT0006573 Vitis vinifera miR403e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>vvi-miR403d MIMAT0006572 Vitis vinifera miR403d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>vvi-miR403c MIMAT0006571 Vitis vinifera miR403c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>vvi-miR403b MIMAT0006570 Vitis vinifera miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>vvi-miR403a MIMAT0006569 Vitis vinifera miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>ptc-miR403c-3p MIMAT0003944 Populus trichocarpa miR403c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>ptc-miR403b MIMAT0002057 Populus trichocarpa miR403b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>ptc-miR403a MIMAT0002056 Populus trichocarpa miR403a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
>ath-miR403-3p MIMAT0001004 Arabidopsis thaliana miR403-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagatt 8
|||||||
Sbjct: 1 ttagatt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 133
Number of successful extensions: 123
Number of sequences better than 100.0: 40
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 40
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
