BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s44
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cfa-miR-8908c MIMAT0034433 Canis familiaris miR-8908c 14 27
cfa-miR-8825 MIMAT0034315 Canis familiaris miR-8825 14 27
aca-miR-5400 MIMAT0022010 Anolis carolinensis miR-5400 14 27
tca-miR-3865-3p MIMAT0018815 Tribolium castaneum miR-3865-3p 14 27
tgu-miR-2980 MIMAT0014490 Taeniopygia guttata miR-2980 14 27
rno-miR-374-3p MIMAT0017223 Rattus norvegicus miR-374-3p 14 27
>cfa-miR-8908c MIMAT0034433 Canis familiaris miR-8908c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attagca 7
|||||||
Sbjct: 2 attagca 8
>cfa-miR-8825 MIMAT0034315 Canis familiaris miR-8825
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attagca 7
|||||||
Sbjct: 8 attagca 2
>aca-miR-5400 MIMAT0022010 Anolis carolinensis miR-5400
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagcac 8
|||||||
Sbjct: 1 ttagcac 7
>tca-miR-3865-3p MIMAT0018815 Tribolium castaneum miR-3865-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagcac 8
|||||||
Sbjct: 1 ttagcac 7
>tgu-miR-2980 MIMAT0014490 Taeniopygia guttata miR-2980
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagcac 8
|||||||
Sbjct: 1 ttagcac 7
>rno-miR-374-3p MIMAT0017223 Rattus norvegicus miR-374-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttagcac 8
|||||||
Sbjct: 2 ttagcac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 213
Number of extensions: 207
Number of successful extensions: 179
Number of sequences better than 100.0: 6
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)