BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dme-miR-9371-3p MIMAT0035206 Drosophila melanogaster miR-9371-3p 14 27
gra-miR8693 MIMAT0034073 Gossypium raimondii miR8693 14 27
prd-miR-7895-3p MIMAT0030581 Panagrellus redivivus miR-7895-3p 14 27
hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11 14 27
mtr-miR2668 MIMAT0013475 Medicago truncatula miR2668 14 27
sme-miR-1993-5p MIMAT0012140 Schmidtea mediterranea miR-1993-5p 14 27
ppt-miR419 MIMAT0004358 Physcomitrella patens miR419 14 27
osa-miR419 MIMAT0001335 Oryza sativa miR419 14 27
>dme-miR-9371-3p MIMAT0035206 Drosophila melanogaster
miR-9371-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attcatc 7
|||||||
Sbjct: 2 attcatc 8
>gra-miR8693 MIMAT0034073 Gossypium raimondii miR8693
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcatcc 8
|||||||
Sbjct: 8 ttcatcc 2
>prd-miR-7895-3p MIMAT0030581 Panagrellus redivivus miR-7895-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attcatc 7
|||||||
Sbjct: 1 attcatc 7
>hvt-miR-H11 MIMAT0012876 Herpesvirus of miR-H11
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttcatcc 8
|||||||
Sbjct: 8 ttcatcc 2
>mtr-miR2668 MIMAT0013475 Medicago truncatula miR2668
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcatcc 8
|||||||
Sbjct: 1 ttcatcc 7
>sme-miR-1993-5p MIMAT0012140 Schmidtea mediterranea miR-1993-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attcatc 7
|||||||
Sbjct: 8 attcatc 2
>ppt-miR419 MIMAT0004358 Physcomitrella patens miR419
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attcatc 7
|||||||
Sbjct: 8 attcatc 2
>osa-miR419 MIMAT0001335 Oryza sativa miR419
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attcatc 7
|||||||
Sbjct: 8 attcatc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 119
Number of extensions: 111
Number of successful extensions: 76
Number of sequences better than 100.0: 8
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
