BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s74
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tae-miR9670-3p MIMAT0035785 Triticum aestivum miR9670-3p               14      27
gra-miR8759 MIMAT0034189 Gossypium raimondii miR8759                   14      27
rgl-miR7799 MIMAT0032240 Rehmannia glutinosa miR7799                   14      27
bdi-miR7755-5p MIMAT0030252 Brachypodium distachyon miR7755-5p         14      27
gga-miR-6670-5p MIMAT0025772 Gallus gallus miR-6670-5p                 14      27
gma-miR5673 MIMAT0022456 Glycine max miR5673                           14      27
cin-miR-5600-3p MIMAT0022324 Ciona intestinalis miR-5600-3p            14      27
mtr-miR5223 MIMAT0021180 Medicago truncatula miR5223                   14      27
tca-miR-750-5p MIMAT0018820 Tribolium castaneum miR-750-5p             14      27
esi-miR3455-3p MIMAT0017756 Ectocarpus siliculosus miR3455-3p          14      27
bmo-miR-2801 MIMAT0013705 Bombyx mori miR-2801                         14      27
bta-miR-2477 MIMAT0012069 Bos taurus miR-2477                          14      27
tca-miR-965-5p MIMAT0019183 Tribolium castaneum miR-965-5p             14      27
hsv1-miR-H6-5p MIMAT0015281 Herpes Simplex miR-H6-5p                   14      27
oan-miR-1364 MIMAT0007027 Ornithorhynchus anatinus miR-1364            14      27
>tae-miR9670-3p MIMAT0035785 Triticum aestivum miR9670-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 8 ttccacc 2
>gra-miR8759 MIMAT0034189 Gossypium raimondii miR8759
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 8 ttccacc 2
>rgl-miR7799 MIMAT0032240 Rehmannia glutinosa miR7799
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 8 attccac 2
>bdi-miR7755-5p MIMAT0030252 Brachypodium distachyon miR7755-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attccac 7
         |||||||
Sbjct: 1 attccac 7
>gga-miR-6670-5p MIMAT0025772 Gallus gallus miR-6670-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 7 attccac 1
>gma-miR5673 MIMAT0022456 Glycine max miR5673
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 8 attccac 2
>cin-miR-5600-3p MIMAT0022324 Ciona intestinalis miR-5600-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 8 attccac 2
>mtr-miR5223 MIMAT0021180 Medicago truncatula miR5223
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 8 attccac 2
>tca-miR-750-5p MIMAT0018820 Tribolium castaneum miR-750-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 8 ttccacc 2
>esi-miR3455-3p MIMAT0017756 Ectocarpus siliculosus miR3455-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 8 ttccacc 2
>bmo-miR-2801 MIMAT0013705 Bombyx mori miR-2801
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 7 attccac 1
>bta-miR-2477 MIMAT0012069 Bos taurus miR-2477
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attccac 7
         |||||||
Sbjct: 7 attccac 1
>tca-miR-965-5p MIMAT0019183 Tribolium castaneum miR-965-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 7 ttccacc 1
>hsv1-miR-H6-5p MIMAT0015281 Herpes Simplex miR-H6-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 7 ttccacc 1
>oan-miR-1364 MIMAT0007027 Ornithorhynchus anatinus miR-1364
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttccacc 8
         |||||||
Sbjct: 1 ttccacc 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 404
Number of extensions: 389
Number of successful extensions: 352
Number of sequences better than 100.0: 15
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)