BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prv-miR-2-5p
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dme-miR-4984-5p MIMAT0020219 Drosophila melanogaster miR-4984-5p       14      20
cel-miR-1832b-5p MIMAT0011449 Caenorhabditis elegans miR-1832b-5p      14      20
sma-miR-8466-5p MIMAT0033651 Schistosoma mansoni miR-8466-5p           12      80
cpa-miR8149 MIMAT0031846 Carica papaya miR8149                         12      80
aly-miR173b-5p MIMAT0031388 Arabidopsis lyrata miR173b-5p              12      80
prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p         12      80
bdi-miR7742-5p MIMAT0030224 Brachypodium distachyon miR7742-5p         12      80
cin-miR-5606-5p MIMAT0022339 Ciona intestinalis miR-5606-5p            12      80
aca-miR-10a-3p MIMAT0021718 Anolis carolinensis miR-10a-3p             12      80
rno-miR-3578 MIMAT0017866 Rattus norvegicus miR-3578                   12      80
aly-miR399e-5p MIMAT0017579 Arabidopsis lyrata miR399e-5p              12      80
aly-miR399d-5p MIMAT0017577 Arabidopsis lyrata miR399d-5p              12      80
aly-miR173a-5p MIMAT0017531 Arabidopsis lyrata miR173a-5p              12      80
hsv2-miR-H19 MIMAT0014701 Herpes Simplex miR-H19                       12      80
sme-miR-2174 MIMAT0011275 Schmidtea mediterranea miR-2174              12      80
gga-miR-1676-3p MIMAT0007561 Gallus gallus miR-1676-3p                 12      80
vvi-miR169y MIMAT0005677 Vitis vinifera miR169y                        12      80
mghv-miR-M1-3-5p MIMAT0017187 Mouse gammaherpesvirus miR-M1-3-5p       12      80
ath-miR173-5p MIMAT0000206 Arabidopsis thaliana miR173-5p              12      80
>dme-miR-4984-5p MIMAT0020219 Drosophila melanogaster
         miR-4984-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attcgct 7
         |||||||
Sbjct: 7 attcgct 1
>cel-miR-1832b-5p MIMAT0011449 Caenorhabditis elegans
         miR-1832b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attcgct 7
         |||||||
Sbjct: 8 attcgct 2
>sma-miR-8466-5p MIMAT0033651 Schistosoma mansoni miR-8466-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 3 attcgc 8
>cpa-miR8149 MIMAT0031846 Carica papaya miR8149
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 6 ttcgct 1
>aly-miR173b-5p MIMAT0031388 Arabidopsis lyrata miR173b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 1 ttcgct 6
>prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 1 attcgc 6
>bdi-miR7742-5p MIMAT0030224 Brachypodium distachyon miR7742-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 3 attcgc 8
>cin-miR-5606-5p MIMAT0022339 Ciona intestinalis miR-5606-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 8 ttcgct 3
>aca-miR-10a-3p MIMAT0021718 Anolis carolinensis miR-10a-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 3 attcgc 8
>rno-miR-3578 MIMAT0017866 Rattus norvegicus miR-3578
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 6 attcgc 1
>aly-miR399e-5p MIMAT0017579 Arabidopsis lyrata miR399e-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 8 attcgc 3
>aly-miR399d-5p MIMAT0017577 Arabidopsis lyrata miR399d-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 attcgc 6
         ||||||
Sbjct: 8 attcgc 3
>aly-miR173a-5p MIMAT0017531 Arabidopsis lyrata miR173a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 1 ttcgct 6
>hsv2-miR-H19 MIMAT0014701 Herpes Simplex miR-H19
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 1 ttcgct 6
>sme-miR-2174 MIMAT0011275 Schmidtea mediterranea miR-2174
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 3 ttcgct 8
>gga-miR-1676-3p MIMAT0007561 Gallus gallus miR-1676-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 8 ttcgct 3
>vvi-miR169y MIMAT0005677 Vitis vinifera miR169y
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 7 ttcgct 2
>mghv-miR-M1-3-5p MIMAT0017187 Mouse gammaherpesvirus
         miR-M1-3-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 6 ttcgct 1
>ath-miR173-5p MIMAT0000206 Arabidopsis thaliana miR173-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 ttcgct 7
         ||||||
Sbjct: 1 ttcgct 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 27
Number of extensions: 25
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)