BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dme-miR-4984-5p MIMAT0020219 Drosophila melanogaster miR-4984-5p 14 20
cel-miR-1832b-5p MIMAT0011449 Caenorhabditis elegans miR-1832b-5p 14 20
sma-miR-8466-5p MIMAT0033651 Schistosoma mansoni miR-8466-5p 12 80
cpa-miR8149 MIMAT0031846 Carica papaya miR8149 12 80
aly-miR173b-5p MIMAT0031388 Arabidopsis lyrata miR173b-5p 12 80
prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p 12 80
bdi-miR7742-5p MIMAT0030224 Brachypodium distachyon miR7742-5p 12 80
cin-miR-5606-5p MIMAT0022339 Ciona intestinalis miR-5606-5p 12 80
aca-miR-10a-3p MIMAT0021718 Anolis carolinensis miR-10a-3p 12 80
rno-miR-3578 MIMAT0017866 Rattus norvegicus miR-3578 12 80
aly-miR399e-5p MIMAT0017579 Arabidopsis lyrata miR399e-5p 12 80
aly-miR399d-5p MIMAT0017577 Arabidopsis lyrata miR399d-5p 12 80
aly-miR173a-5p MIMAT0017531 Arabidopsis lyrata miR173a-5p 12 80
hsv2-miR-H19 MIMAT0014701 Herpes Simplex miR-H19 12 80
sme-miR-2174 MIMAT0011275 Schmidtea mediterranea miR-2174 12 80
gga-miR-1676-3p MIMAT0007561 Gallus gallus miR-1676-3p 12 80
vvi-miR169y MIMAT0005677 Vitis vinifera miR169y 12 80
mghv-miR-M1-3-5p MIMAT0017187 Mouse gammaherpesvirus miR-M1-3-5p 12 80
ath-miR173-5p MIMAT0000206 Arabidopsis thaliana miR173-5p 12 80
>dme-miR-4984-5p MIMAT0020219 Drosophila melanogaster
miR-4984-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attcgct 7
|||||||
Sbjct: 7 attcgct 1
>cel-miR-1832b-5p MIMAT0011449 Caenorhabditis elegans
miR-1832b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attcgct 7
|||||||
Sbjct: 8 attcgct 2
>sma-miR-8466-5p MIMAT0033651 Schistosoma mansoni miR-8466-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attcgc 6
||||||
Sbjct: 3 attcgc 8
>cpa-miR8149 MIMAT0031846 Carica papaya miR8149
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgct 7
||||||
Sbjct: 6 ttcgct 1
>aly-miR173b-5p MIMAT0031388 Arabidopsis lyrata miR173b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgct 7
||||||
Sbjct: 1 ttcgct 6
>prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attcgc 6
||||||
Sbjct: 1 attcgc 6
>bdi-miR7742-5p MIMAT0030224 Brachypodium distachyon miR7742-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attcgc 6
||||||
Sbjct: 3 attcgc 8
>cin-miR-5606-5p MIMAT0022339 Ciona intestinalis miR-5606-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgct 7
||||||
Sbjct: 8 ttcgct 3
>aca-miR-10a-3p MIMAT0021718 Anolis carolinensis miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attcgc 6
||||||
Sbjct: 3 attcgc 8
>rno-miR-3578 MIMAT0017866 Rattus norvegicus miR-3578
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attcgc 6
||||||
Sbjct: 6 attcgc 1
>aly-miR399e-5p MIMAT0017579 Arabidopsis lyrata miR399e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attcgc 6
||||||
Sbjct: 8 attcgc 3
>aly-miR399d-5p MIMAT0017577 Arabidopsis lyrata miR399d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attcgc 6
||||||
Sbjct: 8 attcgc 3
>aly-miR173a-5p MIMAT0017531 Arabidopsis lyrata miR173a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgct 7
||||||
Sbjct: 1 ttcgct 6
>hsv2-miR-H19 MIMAT0014701 Herpes Simplex miR-H19
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgct 7
||||||
Sbjct: 1 ttcgct 6
>sme-miR-2174 MIMAT0011275 Schmidtea mediterranea miR-2174
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgct 7
||||||
Sbjct: 3 ttcgct 8
>gga-miR-1676-3p MIMAT0007561 Gallus gallus miR-1676-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgct 7
||||||
Sbjct: 8 ttcgct 3
>vvi-miR169y MIMAT0005677 Vitis vinifera miR169y
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgct 7
||||||
Sbjct: 7 ttcgct 2
>mghv-miR-M1-3-5p MIMAT0017187 Mouse gammaherpesvirus
miR-M1-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttcgct 7
||||||
Sbjct: 6 ttcgct 1
>ath-miR173-5p MIMAT0000206 Arabidopsis thaliana miR173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttcgct 7
||||||
Sbjct: 1 ttcgct 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 27
Number of extensions: 25
Number of successful extensions: 19
Number of sequences better than 100.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)