BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s50
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
str-miR-8378-5p MIMAT0033408 Strongyloides ratti miR-8378-5p 14 20
oar-miR-544-3p MIMAT0019299 Ovis aries miR-544-3p 14 20
tca-miR-3813-5p MIMAT0018648 Tribolium castaneum miR-3813-5p 14 20
ppy-miR-544 MIMAT0015994 Pongo pygmaeus miR-544 14 20
eca-miR-544 MIMAT0013170 Equus caballus miR-544 14 20
eca-miR-544b MIMAT0013118 Equus caballus miR-544b 14 20
rno-miR-544-3p MIMAT0012831 Rattus norvegicus miR-544-3p 14 20
bta-miR-2315 MIMAT0011835 Bos taurus miR-2315 14 20
cfa-miR-544 MIMAT0009910 Canis familiaris miR-544 14 20
bta-miR-544a MIMAT0009346 Bos taurus miR-544a 14 20
bta-miR-544b MIMAT0009345 Bos taurus miR-544b 14 20
ptr-miR-544 MIMAT0008216 Pan troglodytes miR-544 14 20
mml-miR-544 MIMAT0006408 Macaca mulatta miR-544 14 20
gga-miR-1807 MIMAT0007725 Gallus gallus miR-1807 14 20
mmu-miR-544-3p MIMAT0004941 Mus musculus miR-544-3p 14 20
hsa-miR-544a MIMAT0003164 Homo sapiens miR-544a 14 20
rno-miR-3084d MIMAT0035745 Rattus norvegicus miR-3084d 12 80
rno-miR-3084b-3p MIMAT0035742 Rattus norvegicus miR-3084b-3p 12 80
rno-miR-3084a-3p MIMAT0035740 Rattus norvegicus miR-3084a-3p 12 80
efu-miR-9307 MIMAT0034980 Eptesicus fuscus miR-9307 12 80
sma-miR-8464-5p MIMAT0033647 Schistosoma mansoni miR-8464-5p 12 80
ppc-miR-84f-3p MIMAT0033287 Pristionchus pacificus miR-84f-3p 12 80
bbe-miR-182b-3p MIMAT0031597 Branchiostoma belcheri miR-182b-3p 12 80
mtr-miR2592bp-3p MIMAT0030010 Medicago truncatula miR2592bp-3p 12 80
mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p 12 80
mmu-miR-6922-3p MIMAT0027745 Mus musculus miR-6922-3p 12 80
gga-miR-3524b-3p MIMAT0025753 Gallus gallus miR-3524b-3p 12 80
tgu-miR-2131 MIMAT0025410 Taeniopygia guttata miR-2131 12 80
ptc-miR6469 MIMAT0025202 Populus trichocarpa miR6469 12 80
hsa-miR-6071 MIMAT0023696 Homo sapiens miR-6071 12 80
osa-miR5519 MIMAT0022153 Oryza sativa miR5519 12 80
osa-miR5497 MIMAT0022130 Oryza sativa miR5497 12 80
mtr-miR2629h MIMAT0021310 Medicago truncatula miR2629h 12 80
hsa-miR-5001-3p MIMAT0021022 Homo sapiens miR-5001-3p 12 80
bfl-miR-182b-3p MIMAT0020081 Branchiostoma floridae miR-182b-3p 12 80
tca-miR-3852-3p MIMAT0018761 Tribolium castaneum miR-3852-3p 12 80
cin-miR-4082-3p MIMAT0016654 Ciona intestinalis miR-4082-3p 12 80
gga-miR-3524a MIMAT0016374 Gallus gallus miR-3524a 12 80
mmu-miR-3110-5p MIMAT0014951 Mus musculus miR-3110-5p 12 80
mmu-miR-3098-3p MIMAT0014918 Mus musculus miR-3098-3p 12 80
mmu-miR-3084-3p MIMAT0014877 Mus musculus miR-3084-3p 12 80
api-miR-3045a MIMAT0014784 Acyrthosiphon pisum miR-3045a 12 80
tgu-miR-1784-5p MIMAT0026960 Taeniopygia guttata miR-1784-5p 12 80
bta-miR-2464-5p MIMAT0012051 Bos taurus miR-2464-5p 12 80
crm-miR-239a-3p MIMAT0011617 Caenorhabditis remanei miR-239a-3p 12 80
crm-miR-55-5p MIMAT0011551 Caenorhabditis remanei miR-55-5p 12 80
gga-miR-2131-5p MIMAT0011207 Gallus gallus miR-2131-5p 12 80
tca-miR-283-3p MIMAT0019127 Tribolium castaneum miR-283-3p 12 80
mml-miR-217a MIMAT0006244 Macaca mulatta miR-217a 12 80
gga-miR-1794 MIMAT0007708 Gallus gallus miR-1794 12 80
gga-miR-1784-5p MIMAT0007696 Gallus gallus miR-1784-5p 12 80
gga-miR-1573 MIMAT0007433 Gallus gallus miR-1573 12 80
ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447 12 80
cre-miR907 MIMAT0004389 Chlamydomonas reinhardtii miR907 12 80
ath-miR779.1 MIMAT0003938 Arabidopsis thaliana miR779.1 12 80
rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus miR-rL1-... 12 80
ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p 12 80
cel-miR-55-5p MIMAT0020313 Caenorhabditis elegans miR-55-5p 12 80
>str-miR-8378-5p MIMAT0033408 Strongyloides ratti miR-8378-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 2 attctgc 8
>oar-miR-544-3p MIMAT0019299 Ovis aries miR-544-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>tca-miR-3813-5p MIMAT0018648 Tribolium castaneum miR-3813-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 2 attctgc 8
>ppy-miR-544 MIMAT0015994 Pongo pygmaeus miR-544
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>eca-miR-544 MIMAT0013170 Equus caballus miR-544
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>eca-miR-544b MIMAT0013118 Equus caballus miR-544b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>rno-miR-544-3p MIMAT0012831 Rattus norvegicus miR-544-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>bta-miR-2315 MIMAT0011835 Bos taurus miR-2315
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attctgc 7
|||||||
Sbjct: 8 attctgc 2
>cfa-miR-544 MIMAT0009910 Canis familiaris miR-544
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>bta-miR-544a MIMAT0009346 Bos taurus miR-544a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>bta-miR-544b MIMAT0009345 Bos taurus miR-544b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>ptr-miR-544 MIMAT0008216 Pan troglodytes miR-544
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>mml-miR-544 MIMAT0006408 Macaca mulatta miR-544
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>gga-miR-1807 MIMAT0007725 Gallus gallus miR-1807
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attctgc 7
|||||||
Sbjct: 7 attctgc 1
>mmu-miR-544-3p MIMAT0004941 Mus musculus miR-544-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>hsa-miR-544a MIMAT0003164 Homo sapiens miR-544a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attctgc 7
|||||||
Sbjct: 1 attctgc 7
>rno-miR-3084d MIMAT0035745 Rattus norvegicus miR-3084d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>rno-miR-3084b-3p MIMAT0035742 Rattus norvegicus miR-3084b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>rno-miR-3084a-3p MIMAT0035740 Rattus norvegicus miR-3084a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>efu-miR-9307 MIMAT0034980 Eptesicus fuscus miR-9307
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>sma-miR-8464-5p MIMAT0033647 Schistosoma mansoni miR-8464-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attctg 6
||||||
Sbjct: 1 attctg 6
>ppc-miR-84f-3p MIMAT0033287 Pristionchus pacificus miR-84f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attctg 6
||||||
Sbjct: 1 attctg 6
>bbe-miR-182b-3p MIMAT0031597 Branchiostoma belcheri miR-182b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>mtr-miR2592bp-3p MIMAT0030010 Medicago truncatula miR2592bp-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
>mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attctg 6
||||||
Sbjct: 3 attctg 8
>mmu-miR-6922-3p MIMAT0027745 Mus musculus miR-6922-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 3 ttctgc 8
>gga-miR-3524b-3p MIMAT0025753 Gallus gallus miR-3524b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 8 attctg 3
>tgu-miR-2131 MIMAT0025410 Taeniopygia guttata miR-2131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
>ptc-miR6469 MIMAT0025202 Populus trichocarpa miR6469
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
>hsa-miR-6071 MIMAT0023696 Homo sapiens miR-6071
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>osa-miR5519 MIMAT0022153 Oryza sativa miR5519
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
>osa-miR5497 MIMAT0022130 Oryza sativa miR5497
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>mtr-miR2629h MIMAT0021310 Medicago truncatula miR2629h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 6 ttctgc 1
>hsa-miR-5001-3p MIMAT0021022 Homo sapiens miR-5001-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>bfl-miR-182b-3p MIMAT0020081 Branchiostoma floridae miR-182b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>tca-miR-3852-3p MIMAT0018761 Tribolium castaneum miR-3852-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 3 ttctgc 8
>cin-miR-4082-3p MIMAT0016654 Ciona intestinalis miR-4082-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attctg 6
||||||
Sbjct: 1 attctg 6
>gga-miR-3524a MIMAT0016374 Gallus gallus miR-3524a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>mmu-miR-3110-5p MIMAT0014951 Mus musculus miR-3110-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>mmu-miR-3098-3p MIMAT0014918 Mus musculus miR-3098-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>mmu-miR-3084-3p MIMAT0014877 Mus musculus miR-3084-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>api-miR-3045a MIMAT0014784 Acyrthosiphon pisum miR-3045a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>tgu-miR-1784-5p MIMAT0026960 Taeniopygia guttata miR-1784-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>bta-miR-2464-5p MIMAT0012051 Bos taurus miR-2464-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 3 ttctgc 8
>crm-miR-239a-3p MIMAT0011617 Caenorhabditis remanei miR-239a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>crm-miR-55-5p MIMAT0011551 Caenorhabditis remanei miR-55-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
>gga-miR-2131-5p MIMAT0011207 Gallus gallus miR-2131-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
>tca-miR-283-3p MIMAT0019127 Tribolium castaneum miR-283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>mml-miR-217a MIMAT0006244 Macaca mulatta miR-217a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>gga-miR-1794 MIMAT0007708 Gallus gallus miR-1794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 8 attctg 3
>gga-miR-1784-5p MIMAT0007696 Gallus gallus miR-1784-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>gga-miR-1573 MIMAT0007433 Gallus gallus miR-1573
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 3 ttctgc 8
>ptc-miR1447 MIMAT0006009 Populus trichocarpa miR1447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attctg 6
||||||
Sbjct: 6 attctg 1
>cre-miR907 MIMAT0004389 Chlamydomonas reinhardtii miR907
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 3 ttctgc 8
>ath-miR779.1 MIMAT0003938 Arabidopsis thaliana miR779.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttctgc 7
||||||
Sbjct: 1 ttctgc 6
>rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus
miR-rL1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attctg 6
||||||
Sbjct: 3 attctg 8
>ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attctg 6
||||||
Sbjct: 3 attctg 8
>cel-miR-55-5p MIMAT0020313 Caenorhabditis elegans miR-55-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttctgc 7
||||||
Sbjct: 8 ttctgc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 90
Number of extensions: 74
Number of successful extensions: 58
Number of sequences better than 100.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
