BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rhcmv-miR-rh156-2
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gma-miR397b-3p MIMAT0022991 Glycine max miR397b-3p 14 20
tca-miR-13a-5p MIMAT0019103 Tribolium castaneum miR-13a-5p 14 20
zma-miR171j-5p MIMAT0015199 Zea mays miR171j-5p 14 20
tch-miR-505-3p MIMAT0036499 Tupaia chinensis miR-505-3p 12 80
chi-miR-2483-5p MIMAT0036097 Capra hircus miR-2483-5p 12 80
mse-miR-929b MIMAT0035705 Manduca sexta miR-929b 12 80
bra-miR9556-5p MIMAT0035665 Brassica rapa miR9556-5p 12 80
dvi-miR-929-5p MIMAT0035572 Drosophila virilis miR-929-5p 12 80
nve-miR-9436 MIMAT0035397 Nematostella vectensis miR-9436 12 80
gra-miR8761 MIMAT0034191 Gossypium raimondii miR8761 12 80
ppc-miR-2a-5p MIMAT0032872 Pristionchus pacificus miR-2a-5p 12 80
ssa-miR-216a-3p MIMAT0032517 Salmo salar miR-216a-3p 12 80
ptc-miR6447 MIMAT0025250 Populus trichocarpa miR6447 12 80
mmu-miR-6398 MIMAT0025150 Mus musculus miR-6398 12 80
sma-miR-2a-5p MIMAT0025029 Schistosoma mansoni miR-2a-5p 12 80
hme-miR-929 MIMAT0024992 Heliconius melpomene miR-929 12 80
rno-miR-509-3p MIMAT0024850 Rattus norvegicus miR-509-3p 12 80
mml-miR-514b-3p MIMAT0024348 Macaca mulatta miR-514b-3p 12 80
tur-miR-5734-5p MIMAT0023074 Tetranychus urticae miR-5734-5p 12 80
tur-miR-2-5p MIMAT0023042 Tetranychus urticae miR-2-5p 12 80
asu-miR-2a-5p MIMAT0021425 Ascaris suum miR-2a-5p 12 80
egr-miR-2c-5p MIMAT0020231 Echinococcus granulosus miR-2c-5p 12 80
nlo-miR-929 MIMAT0018417 Nasonia longicornis miR-929 12 80
ngi-miR-929 MIMAT0018414 Nasonia giraulti miR-929 12 80
gma-miR1520q MIMAT0018332 Glycine max miR1520q 12 80
vvi-miR3639-5p MIMAT0018051 Vitis vinifera miR3639-5p 12 80
cin-miR-4074-5p MIMAT0016636 Ciona intestinalis miR-4074-5p 12 80
cin-miR-4038-5p MIMAT0016565 Ciona intestinalis miR-4038-5p 12 80
cin-miR-4001h-3p MIMAT0016460 Ciona intestinalis miR-4001h-3p 12 80
sja-miR-2a-5p MIMAT0016245 Schistosoma japonicum miR-2a-5p 12 80
ppy-miR-514 MIMAT0015942 Pongo pygmaeus miR-514 12 80
ppy-miR-505 MIMAT0015928 Pongo pygmaeus miR-505 12 80
nvi-miR-929 MIMAT0015672 Nasonia vitripennis miR-929 12 80
aae-miR-929 MIMAT0015648 Aedes aegypti miR-929 12 80
hsa-miR-514b-3p MIMAT0015088 Homo sapiens miR-514b-3p 12 80
api-miR-929 MIMAT0014741 Acyrthosiphon pisum miR-929 12 80
tgu-miR-1803-3p MIMAT0014472 Taeniopygia guttata miR-1803-3p 12 80
aae-miR-309b-5p MIMAT0014319 Aedes aegypti miR-309b-5p 12 80
eca-miR-514 MIMAT0013234 Equus caballus miR-514 12 80
eca-miR-505 MIMAT0013229 Equus caballus miR-505 12 80
dsi-miR-929-5p MIMAT0012459 Drosophila simulans miR-929-5p 12 80
dps-miR-929-5p MIMAT0012267 Drosophila pseudoobscura miR-929-5p 12 80
bta-miR-2483-5p MIMAT0012075 Bos taurus miR-2483-5p 12 80
sme-miR-87c-5p MIMAT0012133 Schmidtea mediterranea miR-87c-5p 12 80
ppt-miR2083-3p MIMAT0010023 Physcomitrella patens miR2083-3p 12 80
cfa-miR-514 MIMAT0009877 Canis familiaris miR-514 12 80
bmo-miR-929-5p MIMAT0009158 Bombyx mori miR-929-5p 12 80
bta-miR-505 MIMAT0009341 Bos taurus miR-505 12 80
tca-miR-13b-5p MIMAT0019104 Tribolium castaneum miR-13b-5p 12 80
ptr-miR-505 MIMAT0008178 Pan troglodytes miR-505 12 80
mml-miR-505-3p MIMAT0006369 Macaca mulatta miR-505-3p 12 80
gga-miR-1803 MIMAT0007720 Gallus gallus miR-1803 12 80
pbi-miR-514 MIMAT0005787 Pygathrix bieti miR-514 12 80
ptr-miR-514 MIMAT0005778 Pan troglodytes miR-514 12 80
mml-miR-514a-3p MIMAT0005769 Macaca mulatta miR-514a-3p 12 80
ssy-miR-514 MIMAT0005761 Symphalangus syndactylus miR-514 12 80
age-miR-514 MIMAT0005751 Ateles geoffroyi miR-514 12 80
age-miR-509b MIMAT0005744 Ateles geoffroyi miR-509b 12 80
age-miR-509a MIMAT0005743 Ateles geoffroyi miR-509a 12 80
dme-miR-929-5p MIMAT0020892 Drosophila melanogaster miR-929-5p 12 80
ame-miR-929 MIMAT0004441 Apis mellifera miR-929 12 80
mmu-miR-509-3p MIMAT0004891 Mus musculus miR-509-3p 12 80
mmu-miR-505-3p MIMAT0003513 Mus musculus miR-505-3p 12 80
hsa-miR-514a-3p MIMAT0002883 Homo sapiens miR-514a-3p 12 80
hsa-miR-505-3p MIMAT0002876 Homo sapiens miR-505-3p 12 80
>gma-miR397b-3p MIMAT0022991 Glycine max miR397b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgacg 7
|||||||
Sbjct: 2 attgacg 8
>tca-miR-13a-5p MIMAT0019103 Tribolium castaneum miR-13a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgacg 7
|||||||
Sbjct: 8 attgacg 2
>zma-miR171j-5p MIMAT0015199 Zea mays miR171j-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgacg 7
|||||||
Sbjct: 2 attgacg 8
>tch-miR-505-3p MIMAT0036499 Tupaia chinensis miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>chi-miR-2483-5p MIMAT0036097 Capra hircus miR-2483-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>mse-miR-929b MIMAT0035705 Manduca sexta miR-929b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>bra-miR9556-5p MIMAT0035665 Brassica rapa miR9556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 6 attgac 1
>dvi-miR-929-5p MIMAT0035572 Drosophila virilis miR-929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>nve-miR-9436 MIMAT0035397 Nematostella vectensis miR-9436
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgacg 7
||||||
Sbjct: 1 ttgacg 6
>gra-miR8761 MIMAT0034191 Gossypium raimondii miR8761
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgacg 7
||||||
Sbjct: 3 ttgacg 8
>ppc-miR-2a-5p MIMAT0032872 Pristionchus pacificus miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>ssa-miR-216a-3p MIMAT0032517 Salmo salar miR-216a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>ptc-miR6447 MIMAT0025250 Populus trichocarpa miR6447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgacg 7
||||||
Sbjct: 1 ttgacg 6
>mmu-miR-6398 MIMAT0025150 Mus musculus miR-6398
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 6 attgac 1
>sma-miR-2a-5p MIMAT0025029 Schistosoma mansoni miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 8 attgac 3
>hme-miR-929 MIMAT0024992 Heliconius melpomene miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>rno-miR-509-3p MIMAT0024850 Rattus norvegicus miR-509-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>mml-miR-514b-3p MIMAT0024348 Macaca mulatta miR-514b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>tur-miR-5734-5p MIMAT0023074 Tetranychus urticae miR-5734-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>tur-miR-2-5p MIMAT0023042 Tetranychus urticae miR-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 7 ttgacg 2
>asu-miR-2a-5p MIMAT0021425 Ascaris suum miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>egr-miR-2c-5p MIMAT0020231 Echinococcus granulosus miR-2c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 7 ttgacg 2
>nlo-miR-929 MIMAT0018417 Nasonia longicornis miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>ngi-miR-929 MIMAT0018414 Nasonia giraulti miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>gma-miR1520q MIMAT0018332 Glycine max miR1520q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>vvi-miR3639-5p MIMAT0018051 Vitis vinifera miR3639-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>cin-miR-4074-5p MIMAT0016636 Ciona intestinalis miR-4074-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgacg 7
||||||
Sbjct: 3 ttgacg 8
>cin-miR-4038-5p MIMAT0016565 Ciona intestinalis miR-4038-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 8 attgac 3
>cin-miR-4001h-3p MIMAT0016460 Ciona intestinalis miR-4001h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 6 attgac 1
>sja-miR-2a-5p MIMAT0016245 Schistosoma japonicum miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 8 attgac 3
>ppy-miR-514 MIMAT0015942 Pongo pygmaeus miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>ppy-miR-505 MIMAT0015928 Pongo pygmaeus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>nvi-miR-929 MIMAT0015672 Nasonia vitripennis miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>aae-miR-929 MIMAT0015648 Aedes aegypti miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>hsa-miR-514b-3p MIMAT0015088 Homo sapiens miR-514b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>api-miR-929 MIMAT0014741 Acyrthosiphon pisum miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>tgu-miR-1803-3p MIMAT0014472 Taeniopygia guttata miR-1803-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>aae-miR-309b-5p MIMAT0014319 Aedes aegypti miR-309b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>eca-miR-514 MIMAT0013234 Equus caballus miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>eca-miR-505 MIMAT0013229 Equus caballus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>dsi-miR-929-5p MIMAT0012459 Drosophila simulans miR-929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>dps-miR-929-5p MIMAT0012267 Drosophila pseudoobscura miR-929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>bta-miR-2483-5p MIMAT0012075 Bos taurus miR-2483-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>sme-miR-87c-5p MIMAT0012133 Schmidtea mediterranea miR-87c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 6 attgac 1
>ppt-miR2083-3p MIMAT0010023 Physcomitrella patens miR2083-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>cfa-miR-514 MIMAT0009877 Canis familiaris miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>bmo-miR-929-5p MIMAT0009158 Bombyx mori miR-929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>bta-miR-505 MIMAT0009341 Bos taurus miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>tca-miR-13b-5p MIMAT0019104 Tribolium castaneum miR-13b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgac 6
||||||
Sbjct: 8 attgac 3
>ptr-miR-505 MIMAT0008178 Pan troglodytes miR-505
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>mml-miR-505-3p MIMAT0006369 Macaca mulatta miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>gga-miR-1803 MIMAT0007720 Gallus gallus miR-1803
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>pbi-miR-514 MIMAT0005787 Pygathrix bieti miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>ptr-miR-514 MIMAT0005778 Pan troglodytes miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>mml-miR-514a-3p MIMAT0005769 Macaca mulatta miR-514a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>ssy-miR-514 MIMAT0005761 Symphalangus syndactylus miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>age-miR-514 MIMAT0005751 Ateles geoffroyi miR-514
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>age-miR-509b MIMAT0005744 Ateles geoffroyi miR-509b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>age-miR-509a MIMAT0005743 Ateles geoffroyi miR-509a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>dme-miR-929-5p MIMAT0020892 Drosophila melanogaster miR-929-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>ame-miR-929 MIMAT0004441 Apis mellifera miR-929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>mmu-miR-509-3p MIMAT0004891 Mus musculus miR-509-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 3 attgac 8
>mmu-miR-505-3p MIMAT0003513 Mus musculus miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
>hsa-miR-514a-3p MIMAT0002883 Homo sapiens miR-514a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgac 6
||||||
Sbjct: 1 attgac 6
>hsa-miR-505-3p MIMAT0002876 Homo sapiens miR-505-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgacg 7
||||||
Sbjct: 6 ttgacg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 80
Number of extensions: 77
Number of successful extensions: 65
Number of sequences better than 100.0: 65
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 65
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
