BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rrv-miR-rr1-13-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p                 16   6.9  
oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p        16   6.9  
mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p                16   6.9  
dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p                     16   6.9  
chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p                  14      27
tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p               14      27
hbr-miR9386 MIMAT0035235 Hevea brasiliensis miR9386                    14      27
efu-miR-9186n MIMAT0034962 Eptesicus fuscus miR-9186n                  14      27
eca-miR-9154 MIMAT0034730 Equus caballus miR-9154                      14      27
cfa-miR-6516 MIMAT0034393 Canis familiaris miR-6516                    14      27
ssa-miR-93a-2-3p MIMAT0032715 Salmo salar miR-93a-2-3p                 14      27
ssa-miR-93a-3p MIMAT0032714 Salmo salar miR-93a-3p                     14      27
bta-miR-6516 MIMAT0030443 Bos taurus miR-6516                          14      27
hsa-miR-6516-5p MIMAT0030417 Homo sapiens miR-6516-5p                  14      27
ipu-miR-7572 MIMAT0029571 Ictalurus punctatus miR-7572                 14      27
mdo-miR-7258-3p MIMAT0028483 Monodelphis domestica miR-7258-3p         14      27
mmu-miR-6516-5p MIMAT0027343 Mus musculus miR-6516-5p                  14      27
mmu-miR-6418-3p MIMAT0025174 Mus musculus miR-6418-3p                  14      27
hco-miR-5921-5p MIMAT0023395 Haemonchus contortus miR-5921-5p          14      27
tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p           14      27
dps-miR-2553-3p MIMAT0012367 Drosophila pseudoobscura miR-2553-3p      14      27
gga-miR-1811 MIMAT0007729 Gallus gallus miR-1811                       14      27
mdo-miR-191-3p MIMAT0026696 Monodelphis domestica miR-191-3p           14      27
hsa-miR-106a-3p MIMAT0004517 Homo sapiens miR-106a-3p                  14      27
>ssa-miR-20a-1-3p MIMAT0032503 Salmo salar miR-20a-1-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 attgcagt 8
         ||||||||
Sbjct: 8 attgcagt 1
>oan-miR-106-3p MIMAT0006850 Ornithorhynchus anatinus miR-106-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 attgcagt 8
         ||||||||
Sbjct: 8 attgcagt 1
>mml-miR-106a-3p MIMAT0026604 Macaca mulatta miR-106a-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 attgcagt 8
         ||||||||
Sbjct: 8 attgcagt 1
>dre-miR-20b-3p MIMAT0031939 Danio rerio miR-20b-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 attgcagt 8
         ||||||||
Sbjct: 8 attgcagt 1
>chi-miR-106a-3p MIMAT0035907 Capra hircus miR-106a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 8 ttgcagt 2
>tae-miR9664-3p MIMAT0035775 Triticum aestivum miR9664-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 1 ttgcagt 7
>hbr-miR9386 MIMAT0035235 Hevea brasiliensis miR9386
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>efu-miR-9186n MIMAT0034962 Eptesicus fuscus miR-9186n
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>eca-miR-9154 MIMAT0034730 Equus caballus miR-9154
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>cfa-miR-6516 MIMAT0034393 Canis familiaris miR-6516
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>ssa-miR-93a-2-3p MIMAT0032715 Salmo salar miR-93a-2-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 7 ttgcagt 1
>ssa-miR-93a-3p MIMAT0032714 Salmo salar miR-93a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 7 ttgcagt 1
>bta-miR-6516 MIMAT0030443 Bos taurus miR-6516
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>hsa-miR-6516-5p MIMAT0030417 Homo sapiens miR-6516-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>ipu-miR-7572 MIMAT0029571 Ictalurus punctatus miR-7572
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 2 attgcag 8
>mdo-miR-7258-3p MIMAT0028483 Monodelphis domestica miR-7258-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 7 attgcag 1
>mmu-miR-6516-5p MIMAT0027343 Mus musculus miR-6516-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 2 ttgcagt 8
>mmu-miR-6418-3p MIMAT0025174 Mus musculus miR-6418-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 7 ttgcagt 1
>hco-miR-5921-5p MIMAT0023395 Haemonchus contortus miR-5921-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 7 attgcag 1
>tca-miR-3896-3p MIMAT0018895 Tribolium castaneum miR-3896-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttgcagt 8
         |||||||
Sbjct: 8 ttgcagt 2
>dps-miR-2553-3p MIMAT0012367 Drosophila pseudoobscura
         miR-2553-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 2 attgcag 8
>gga-miR-1811 MIMAT0007729 Gallus gallus miR-1811
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 2 attgcag 8
>mdo-miR-191-3p MIMAT0026696 Monodelphis domestica miR-191-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 8 attgcag 2
>hsa-miR-106a-3p MIMAT0004517 Homo sapiens miR-106a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attgcag 7
         |||||||
Sbjct: 7 attgcag 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 619
Number of extensions: 591
Number of successful extensions: 272
Number of sequences better than 100.0: 24
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 24
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)