BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= dev-miR-d24-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

str-miR-8383-3p MIMAT0033425 Strongyloides ratti miR-8383-3p           16   6.9  
dev-miR-D24-3p MIMAT0028201 Duck enteritis miR-D24-3p                  16   6.9  
efu-miR-9309 MIMAT0034982 Eptesicus fuscus miR-9309                    14      27
crm-miR-1817b MIMAT0029613 Caenorhabditis remanei miR-1817b            14      27
cme-miR169g MIMAT0026172 Cucumis melo miR169g                          14      27
mmu-miR-7002-5p MIMAT0027906 Mus musculus miR-7002-5p                  14      27
ptc-miR169ag MIMAT0025269 Populus trichocarpa miR169ag                 14      27
gma-miR169s MIMAT0023218 Glycine max miR169s                           14      27
tcc-miR169f MIMAT0020396 Theobroma cacao miR169f                       14      27
gma-miR4349 MIMAT0018238 Glycine max miR4349                           14      27
hvu-miR169 MIMAT0018218 Hordeum vulgare miR169                         14      27
mtr-miR2648 MIMAT0013420 Medicago truncatula miR2648                   14      27
cbr-miR-1817 MIMAT0011486 Caenorhabditis briggsae miR-1817             14      27
cel-miR-1817 MIMAT0006584 Caenorhabditis elegans miR-1817              14      27
vvi-miR169v MIMAT0006552 Vitis vinifera miR169v                        14      27
gma-miR169c MIMAT0007357 Glycine max miR169c                           14      27
oan-miR-1351-3p MIMAT0026756 Ornithorhynchus anatinus miR-1351-3p      14      27
mtr-miR169f MIMAT0011069 Medicago truncatula miR169f                   14      27
mtr-miR169d-5p MIMAT0011064 Medicago truncatula miR169d-5p             14      27
ptc-miR169o MIMAT0001971 Populus trichocarpa miR169o                   14      27
>str-miR-8383-3p MIMAT0033425 Strongyloides ratti miR-8383-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 attggctt 8
         ||||||||
Sbjct: 1 attggctt 8
>dev-miR-D24-3p MIMAT0028201 Duck enteritis miR-D24-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 attggctt 8
         ||||||||
Sbjct: 1 attggctt 8
>efu-miR-9309 MIMAT0034982 Eptesicus fuscus miR-9309
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 2 ttggctt 8
>crm-miR-1817b MIMAT0029613 Caenorhabditis remanei miR-1817b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attggct 7
         |||||||
Sbjct: 8 attggct 2
>cme-miR169g MIMAT0026172 Cucumis melo miR169g
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>mmu-miR-7002-5p MIMAT0027906 Mus musculus miR-7002-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 1 ttggctt 7
>ptc-miR169ag MIMAT0025269 Populus trichocarpa miR169ag
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>gma-miR169s MIMAT0023218 Glycine max miR169s
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>tcc-miR169f MIMAT0020396 Theobroma cacao miR169f
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>gma-miR4349 MIMAT0018238 Glycine max miR4349
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 attggct 7
         |||||||
Sbjct: 2 attggct 8
>hvu-miR169 MIMAT0018218 Hordeum vulgare miR169
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>mtr-miR2648 MIMAT0013420 Medicago truncatula miR2648
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attggct 7
         |||||||
Sbjct: 8 attggct 2
>cbr-miR-1817 MIMAT0011486 Caenorhabditis briggsae miR-1817
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attggct 7
         |||||||
Sbjct: 8 attggct 2
>cel-miR-1817 MIMAT0006584 Caenorhabditis elegans miR-1817
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 attggct 7
         |||||||
Sbjct: 8 attggct 2
>vvi-miR169v MIMAT0006552 Vitis vinifera miR169v
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>gma-miR169c MIMAT0007357 Glycine max miR169c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>oan-miR-1351-3p MIMAT0026756 Ornithorhynchus anatinus
         miR-1351-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 1 ttggctt 7
>mtr-miR169f MIMAT0011069 Medicago truncatula miR169f
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>mtr-miR169d-5p MIMAT0011064 Medicago truncatula miR169d-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
>ptc-miR169o MIMAT0001971 Populus trichocarpa miR169o
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ttggctt 8
         |||||||
Sbjct: 7 ttggctt 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 530
Number of extensions: 508
Number of successful extensions: 187
Number of sequences better than 100.0: 20
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)