BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-7857-3p MIMAT0037007 Sus scrofa miR-7857-3p 14 20
dvi-miR-9538-5p MIMAT0035618 Drosophila virilis miR-9538-5p 14 20
hsa-miR-6739-3p MIMAT0027380 Homo sapiens miR-6739-3p 14 20
pde-miR3701 MIMAT0025352 Pinus densata miR3701 14 20
hco-miR-5886a MIMAT0023320 Haemonchus contortus miR-5886a 14 20
gma-miR5030 MIMAT0021049 Glycine max miR5030 14 20
cel-miR-4811-5p MIMAT0019996 Caenorhabditis elegans miR-4811-5p 14 20
pma-miR-4615 MIMAT0019649 Petromyzon marinus miR-4615 14 20
aly-miR773b-3p MIMAT0017684 Arabidopsis lyrata miR773b-3p 14 20
mdv1-miR-M8-5p MIMAT0005805 Mareks disease miR-M8-5p 14 20
oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p 12 80
chi-miR-338-5p MIMAT0036149 Capra hircus miR-338-5p 12 80
bdi-miR9487 MIMAT0035494 Brachypodium distachyon miR9487 12 80
sly-miR9474-3p MIMAT0035464 Solanum lycopersicum miR9474-3p 12 80
bol-miR9409 MIMAT0035364 Brassica oleracea miR9409 12 80
gsa-miR-76a-5p MIMAT0035286 Gyrodactylus salaris miR-76a-5p 12 80
efu-miR-375 MIMAT0035180 Eptesicus fuscus miR-375 12 80
efu-miR-9281 MIMAT0034923 Eptesicus fuscus miR-9281 12 80
gra-miR8681 MIMAT0034052 Gossypium raimondii miR8681 12 80
ppc-miR-8301-3p MIMAT0033122 Pristionchus pacificus miR-8301-3p 12 80
ssa-miR-338a-5p MIMAT0032616 Salmo salar miR-338a-5p 12 80
ssa-miR-338a-3-5p MIMAT0032614 Salmo salar miR-338a-3-5p 12 80
bbe-miR-2071-5p MIMAT0031639 Branchiostoma belcheri miR-2071-5p 12 80
stu-miR8014-5p MIMAT0031196 Solanum tuberosum miR8014-5p 12 80
prd-miR-7971-3p MIMAT0030845 Panagrellus redivivus miR-7971-3p 12 80
prd-miR-7879-3p MIMAT0030515 Panagrellus redivivus miR-7879-3p 12 80
bdi-miR7777-3p.1 MIMAT0030309 Brachypodium distachyon miR7777-3p.1 12 80
bdi-miR7711-3p.1 MIMAT0030145 Brachypodium distachyon miR7711-3p.1 12 80
bta-miR-3613b MIMAT0029948 Bos taurus miR-3613b 12 80
lva-miR-375-3p MIMAT0032220 Lytechinus variegatus miR-375-3p 12 80
crm-miR-7610 MIMAT0029628 Caenorhabditis remanei miR-7610 12 80
ghr-miR7489 MIMAT0029131 Gossypium hirsutum miR7489 12 80
oan-miR-7415-5p MIMAT0028978 Ornithorhynchus anatinus miR-7415-5p 12 80
mml-miR-4677-5p MIMAT0028306 Macaca mulatta miR-4677-5p 12 80
hsa-miR-7156-5p MIMAT0028222 Homo sapiens miR-7156-5p 12 80
dev-miR-D3-3p MIMAT0028172 Duck enteritis miR-D3-3p 12 80
mmu-miR-6969-3p MIMAT0027841 Mus musculus miR-6969-3p 12 80
gga-miR-6682-3p MIMAT0025787 Gallus gallus miR-6682-3p 12 80
nta-miR6145e MIMAT0024765 Nicotiana tabacum miR6145e 12 80
nta-miR6145d MIMAT0024764 Nicotiana tabacum miR6145d 12 80
nta-miR6025d MIMAT0024732 Nicotiana tabacum miR6025d 12 80
osa-miR5522 MIMAT0022156 Oryza sativa miR5522 12 80
aca-miR-338-5p MIMAT0021937 Anolis carolinensis miR-338-5p 12 80
gma-miR5372 MIMAT0021610 Glycine max miR5372 12 80
hsa-miR-4677-5p MIMAT0019760 Homo sapiens miR-4677-5p 12 80
hsa-miR-4445-5p MIMAT0018963 Homo sapiens miR-4445-5p 12 80
tca-miR-3889-5p MIMAT0018876 Tribolium castaneum miR-3889-5p 12 80
cin-miR-4203-3p MIMAT0016823 Ciona intestinalis miR-4203-3p 12 80
ppy-miR-338-5p MIMAT0015840 Pongo pygmaeus miR-338-5p 12 80
bmo-miR-3409 MIMAT0015615 Bombyx mori miR-3409 12 80
bmo-miR-3299 MIMAT0015488 Bombyx mori miR-3299 12 80
tgu-miR-2973-3p MIMAT0026968 Taeniopygia guttata miR-2973-3p 12 80
zma-miR166n-5p MIMAT0015321 Zea mays miR166n-5p 12 80
eca-miR-338-5p MIMAT0013035 Equus caballus miR-338-5p 12 80
dsi-miR-982c MIMAT0012513 Drosophila simulans miR-982c 12 80
bta-miR-1814b MIMAT0011908 Bos taurus miR-1814b 12 80
dre-miR-2189 MIMAT0011311 Danio rerio miR-2189 12 80
bfl-miR-2071-3p MIMAT0009999 Branchiostoma floridae miR-2071-3p 12 80
spu-miR-375 MIMAT0009648 Strongylocentrotus purpuratus miR-375 12 80
bta-miR-375 MIMAT0009303 Bos taurus miR-375 12 80
mml-miR-338-5p MIMAT0006277 Macaca mulatta miR-338-5p 12 80
mdo-miR-375 MIMAT0004138 Monodelphis domestica miR-375 12 80
zma-miR166k-5p MIMAT0015184 Zea mays miR166k-5p 12 80
osa-miR166l-5p MIMAT0022871 Oryza sativa miR166l-5p 12 80
hsa-miR-338-5p MIMAT0004701 Homo sapiens miR-338-5p 12 80
mmu-miR-338-5p MIMAT0004647 Mus musculus miR-338-5p 12 80
rno-miR-338-5p MIMAT0004646 Rattus norvegicus miR-338-5p 12 80
>ssc-miR-7857-3p MIMAT0037007 Sus scrofa miR-7857-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgttc 7
|||||||
Sbjct: 1 attgttc 7
>dvi-miR-9538-5p MIMAT0035618 Drosophila virilis miR-9538-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgttc 7
|||||||
Sbjct: 1 attgttc 7
>hsa-miR-6739-3p MIMAT0027380 Homo sapiens miR-6739-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgttc 7
|||||||
Sbjct: 1 attgttc 7
>pde-miR3701 MIMAT0025352 Pinus densata miR3701
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttc 7
|||||||
Sbjct: 8 attgttc 2
>hco-miR-5886a MIMAT0023320 Haemonchus contortus miR-5886a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttc 7
|||||||
Sbjct: 7 attgttc 1
>gma-miR5030 MIMAT0021049 Glycine max miR5030
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttc 7
|||||||
Sbjct: 8 attgttc 2
>cel-miR-4811-5p MIMAT0019996 Caenorhabditis elegans miR-4811-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttc 7
|||||||
Sbjct: 8 attgttc 2
>pma-miR-4615 MIMAT0019649 Petromyzon marinus miR-4615
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgttc 7
|||||||
Sbjct: 2 attgttc 8
>aly-miR773b-3p MIMAT0017684 Arabidopsis lyrata miR773b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgttc 7
|||||||
Sbjct: 2 attgttc 8
>mdv1-miR-M8-5p MIMAT0005805 Mareks disease miR-M8-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attgttc 7
|||||||
Sbjct: 2 attgttc 8
>oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 8 attgtt 3
>chi-miR-338-5p MIMAT0036149 Capra hircus miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>bdi-miR9487 MIMAT0035494 Brachypodium distachyon miR9487
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>sly-miR9474-3p MIMAT0035464 Solanum lycopersicum miR9474-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>bol-miR9409 MIMAT0035364 Brassica oleracea miR9409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>gsa-miR-76a-5p MIMAT0035286 Gyrodactylus salaris miR-76a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>efu-miR-375 MIMAT0035180 Eptesicus fuscus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>efu-miR-9281 MIMAT0034923 Eptesicus fuscus miR-9281
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>gra-miR8681 MIMAT0034052 Gossypium raimondii miR8681
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>ppc-miR-8301-3p MIMAT0033122 Pristionchus pacificus miR-8301-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgttc 7
||||||
Sbjct: 7 ttgttc 2
>ssa-miR-338a-5p MIMAT0032616 Salmo salar miR-338a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>ssa-miR-338a-3-5p MIMAT0032614 Salmo salar miR-338a-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>bbe-miR-2071-5p MIMAT0031639 Branchiostoma belcheri miR-2071-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>stu-miR8014-5p MIMAT0031196 Solanum tuberosum miR8014-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>prd-miR-7971-3p MIMAT0030845 Panagrellus redivivus miR-7971-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgttc 7
||||||
Sbjct: 8 ttgttc 3
>prd-miR-7879-3p MIMAT0030515 Panagrellus redivivus miR-7879-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>bdi-miR7777-3p.1 MIMAT0030309 Brachypodium distachyon
miR7777-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>bdi-miR7711-3p.1 MIMAT0030145 Brachypodium distachyon
miR7711-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>bta-miR-3613b MIMAT0029948 Bos taurus miR-3613b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgttc 7
||||||
Sbjct: 6 ttgttc 1
>lva-miR-375-3p MIMAT0032220 Lytechinus variegatus miR-375-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>crm-miR-7610 MIMAT0029628 Caenorhabditis remanei miR-7610
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgttc 7
||||||
Sbjct: 8 ttgttc 3
>ghr-miR7489 MIMAT0029131 Gossypium hirsutum miR7489
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>oan-miR-7415-5p MIMAT0028978 Ornithorhynchus anatinus
miR-7415-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>mml-miR-4677-5p MIMAT0028306 Macaca mulatta miR-4677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>hsa-miR-7156-5p MIMAT0028222 Homo sapiens miR-7156-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>dev-miR-D3-3p MIMAT0028172 Duck enteritis miR-D3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>mmu-miR-6969-3p MIMAT0027841 Mus musculus miR-6969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>gga-miR-6682-3p MIMAT0025787 Gallus gallus miR-6682-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgttc 7
||||||
Sbjct: 8 ttgttc 3
>nta-miR6145e MIMAT0024765 Nicotiana tabacum miR6145e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>nta-miR6145d MIMAT0024764 Nicotiana tabacum miR6145d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>nta-miR6025d MIMAT0024732 Nicotiana tabacum miR6025d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>osa-miR5522 MIMAT0022156 Oryza sativa miR5522
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>aca-miR-338-5p MIMAT0021937 Anolis carolinensis miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>gma-miR5372 MIMAT0021610 Glycine max miR5372
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>hsa-miR-4677-5p MIMAT0019760 Homo sapiens miR-4677-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>hsa-miR-4445-5p MIMAT0018963 Homo sapiens miR-4445-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>tca-miR-3889-5p MIMAT0018876 Tribolium castaneum miR-3889-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>cin-miR-4203-3p MIMAT0016823 Ciona intestinalis miR-4203-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 8 attgtt 3
>ppy-miR-338-5p MIMAT0015840 Pongo pygmaeus miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>bmo-miR-3409 MIMAT0015615 Bombyx mori miR-3409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttgttc 7
||||||
Sbjct: 7 ttgttc 2
>bmo-miR-3299 MIMAT0015488 Bombyx mori miR-3299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>tgu-miR-2973-3p MIMAT0026968 Taeniopygia guttata miR-2973-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>zma-miR166n-5p MIMAT0015321 Zea mays miR166n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>eca-miR-338-5p MIMAT0013035 Equus caballus miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>dsi-miR-982c MIMAT0012513 Drosophila simulans miR-982c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>bta-miR-1814b MIMAT0011908 Bos taurus miR-1814b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>dre-miR-2189 MIMAT0011311 Danio rerio miR-2189
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>bfl-miR-2071-3p MIMAT0009999 Branchiostoma floridae miR-2071-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 1 attgtt 6
>spu-miR-375 MIMAT0009648 Strongylocentrotus purpuratus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 1 ttgttc 6
>bta-miR-375 MIMAT0009303 Bos taurus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>mml-miR-338-5p MIMAT0006277 Macaca mulatta miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>mdo-miR-375 MIMAT0004138 Monodelphis domestica miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttgttc 7
||||||
Sbjct: 3 ttgttc 8
>zma-miR166k-5p MIMAT0015184 Zea mays miR166k-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>osa-miR166l-5p MIMAT0022871 Oryza sativa miR166l-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attgtt 6
||||||
Sbjct: 3 attgtt 8
>hsa-miR-338-5p MIMAT0004701 Homo sapiens miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>mmu-miR-338-5p MIMAT0004647 Mus musculus miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
>rno-miR-338-5p MIMAT0004646 Rattus norvegicus miR-338-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attgtt 6
||||||
Sbjct: 6 attgtt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 139
Number of extensions: 129
Number of successful extensions: 67
Number of sequences better than 100.0: 67
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 67
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
