BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d3-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ghr-miR7489 MIMAT0029131 Gossypium hirsutum miR7489 16 6.9
dev-miR-D3-3p MIMAT0028172 Duck enteritis miR-D3-3p 16 6.9
oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p 14 27
sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p 14 27
sma-miR-7-3p MIMAT0033599 Schistosoma mansoni miR-7-3p 14 27
bbe-miR-2062-5p MIMAT0031623 Branchiostoma belcheri miR-2062-5p 14 27
osa-miR5827 MIMAT0023301 Oryza sativa miR5827 14 27
vvi-miR3638-3p MIMAT0018050 Vitis vinifera miR3638-3p 14 27
bfl-miR-2062-5p MIMAT0009988 Branchiostoma floridae miR-2062-5p 14 27
mml-miR-196a-3p MIMAT0026839 Macaca mulatta miR-196a-3p 14 27
cin-miR-7-3p MIMAT0015251 Ciona intestinalis miR-7-3p 14 27
>ghr-miR7489 MIMAT0029131 Gossypium hirsutum miR7489
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 attgttgc 8
||||||||
Sbjct: 1 attgttgc 8
>dev-miR-D3-3p MIMAT0028172 Duck enteritis miR-D3-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 attgttgc 8
||||||||
Sbjct: 1 attgttgc 8
>oha-miR-338-5p MIMAT0036903 Ophiophagus hannah miR-338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttg 7
|||||||
Sbjct: 8 attgttg 2
>sma-miR-8448-5p MIMAT0033606 Schistosoma mansoni miR-8448-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgttgc 8
|||||||
Sbjct: 7 ttgttgc 1
>sma-miR-7-3p MIMAT0033599 Schistosoma mansoni miR-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttg 7
|||||||
Sbjct: 7 attgttg 1
>bbe-miR-2062-5p MIMAT0031623 Branchiostoma belcheri miR-2062-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgttgc 8
|||||||
Sbjct: 8 ttgttgc 2
>osa-miR5827 MIMAT0023301 Oryza sativa miR5827
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttgttgc 8
|||||||
Sbjct: 2 ttgttgc 8
>vvi-miR3638-3p MIMAT0018050 Vitis vinifera miR3638-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgttgc 8
|||||||
Sbjct: 7 ttgttgc 1
>bfl-miR-2062-5p MIMAT0009988 Branchiostoma floridae miR-2062-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgttgc 8
|||||||
Sbjct: 8 ttgttgc 2
>mml-miR-196a-3p MIMAT0026839 Macaca mulatta miR-196a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ttgttgc 8
|||||||
Sbjct: 8 ttgttgc 2
>cin-miR-7-3p MIMAT0015251 Ciona intestinalis miR-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attgttg 7
|||||||
Sbjct: 7 attgttg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 178
Number of extensions: 165
Number of successful extensions: 128
Number of sequences better than 100.0: 11
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
