BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-12-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-191b MIMAT0034750 Equus caballus miR-191b 14 27
pxy-miR-8493 MIMAT0033701 Plutella xylostella miR-8493 14 27
cin-miR-4173-5p MIMAT0016781 Ciona intestinalis miR-4173-5p 14 27
rno-miR-191b MIMAT0017817 Rattus norvegicus miR-191b 14 27
aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p 14 27
rlcv-miR-rL1-30-3p MIMAT0016954 Rhesus lymphocryptovirus miR-rL1... 14 27
ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a 14 27
>eca-miR-191b MIMAT0034750 Equus caballus miR-191b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttcgtt 8
|||||||
Sbjct: 8 tttcgtt 2
>pxy-miR-8493 MIMAT0033701 Plutella xylostella miR-8493
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttcgt 7
|||||||
Sbjct: 8 atttcgt 2
>cin-miR-4173-5p MIMAT0016781 Ciona intestinalis miR-4173-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttcgt 7
|||||||
Sbjct: 1 atttcgt 7
>rno-miR-191b MIMAT0017817 Rattus norvegicus miR-191b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttcgtt 8
|||||||
Sbjct: 8 tttcgtt 2
>aly-miR858-5p MIMAT0017645 Arabidopsis lyrata miR858-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttcgtt 8
|||||||
Sbjct: 1 tttcgtt 7
>rlcv-miR-rL1-30-3p MIMAT0016954 Rhesus lymphocryptovirus
miR-rL1-30-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttcgtt 8
|||||||
Sbjct: 1 tttcgtt 7
>ath-miR858a MIMAT0004302 Arabidopsis thaliana miR858a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttcgtt 8
|||||||
Sbjct: 1 tttcgtt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 87
Number of extensions: 80
Number of successful extensions: 71
Number of sequences better than 100.0: 7
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
