BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s17
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8674b MIMAT0034197 Gossypium raimondii miR8674b 14 27
ppc-miR-8287-3p MIMAT0033084 Pristionchus pacificus miR-8287-3p 14 27
hsa-miR-7159-3p MIMAT0028229 Homo sapiens miR-7159-3p 14 27
mse-miR-6095 MIMAT0024503 Manduca sexta miR-6095 14 27
hsa-miR-4482-3p MIMAT0020958 Homo sapiens miR-4482-3p 14 27
gma-miR4352a MIMAT0018241 Glycine max miR4352a 14 27
tca-miR-3821-3p MIMAT0018669 Tribolium castaneum miR-3821-3p 14 27
ppt-miR1027b MIMAT0005115 Physcomitrella patens miR1027b 14 27
ppt-miR1027a MIMAT0005114 Physcomitrella patens miR1027a 14 27
ath-miR841a-3p MIMAT0032022 Arabidopsis thaliana miR841a-3p 14 27
mghv-miR-M1-1-3p MIMAT0001564 Mouse gammaherpesvirus miR-M1-1-3p 14 27
>gra-miR8674b MIMAT0034197 Gossypium raimondii miR8674b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttcta 7
|||||||
Sbjct: 8 atttcta 2
>ppc-miR-8287-3p MIMAT0033084 Pristionchus pacificus miR-8287-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttcta 7
|||||||
Sbjct: 7 atttcta 1
>hsa-miR-7159-3p MIMAT0028229 Homo sapiens miR-7159-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctat 8
|||||||
Sbjct: 1 tttctat 7
>mse-miR-6095 MIMAT0024503 Manduca sexta miR-6095
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttctat 8
|||||||
Sbjct: 8 tttctat 2
>hsa-miR-4482-3p MIMAT0020958 Homo sapiens miR-4482-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctat 8
|||||||
Sbjct: 1 tttctat 7
>gma-miR4352a MIMAT0018241 Glycine max miR4352a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttcta 7
|||||||
Sbjct: 1 atttcta 7
>tca-miR-3821-3p MIMAT0018669 Tribolium castaneum miR-3821-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttcta 7
|||||||
Sbjct: 1 atttcta 7
>ppt-miR1027b MIMAT0005115 Physcomitrella patens miR1027b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctat 8
|||||||
Sbjct: 1 tttctat 7
>ppt-miR1027a MIMAT0005114 Physcomitrella patens miR1027a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttctat 8
|||||||
Sbjct: 1 tttctat 7
>ath-miR841a-3p MIMAT0032022 Arabidopsis thaliana miR841a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttcta 7
|||||||
Sbjct: 1 atttcta 7
>mghv-miR-M1-1-3p MIMAT0001564 Mouse gammaherpesvirus
miR-M1-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttcta 7
|||||||
Sbjct: 7 atttcta 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 91
Number of successful extensions: 76
Number of sequences better than 100.0: 11
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)