BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s17
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gra-miR8674b MIMAT0034197 Gossypium raimondii miR8674b                 14      27
ppc-miR-8287-3p MIMAT0033084 Pristionchus pacificus miR-8287-3p        14      27
hsa-miR-7159-3p MIMAT0028229 Homo sapiens miR-7159-3p                  14      27
mse-miR-6095 MIMAT0024503 Manduca sexta miR-6095                       14      27
hsa-miR-4482-3p MIMAT0020958 Homo sapiens miR-4482-3p                  14      27
gma-miR4352a MIMAT0018241 Glycine max miR4352a                         14      27
tca-miR-3821-3p MIMAT0018669 Tribolium castaneum miR-3821-3p           14      27
ppt-miR1027b MIMAT0005115 Physcomitrella patens miR1027b               14      27
ppt-miR1027a MIMAT0005114 Physcomitrella patens miR1027a               14      27
ath-miR841a-3p MIMAT0032022 Arabidopsis thaliana miR841a-3p            14      27
mghv-miR-M1-1-3p MIMAT0001564 Mouse gammaherpesvirus miR-M1-1-3p       14      27
>gra-miR8674b MIMAT0034197 Gossypium raimondii miR8674b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atttcta 7
         |||||||
Sbjct: 8 atttcta 2
>ppc-miR-8287-3p MIMAT0033084 Pristionchus pacificus miR-8287-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atttcta 7
         |||||||
Sbjct: 7 atttcta 1
>hsa-miR-7159-3p MIMAT0028229 Homo sapiens miR-7159-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctat 8
         |||||||
Sbjct: 1 tttctat 7
>mse-miR-6095 MIMAT0024503 Manduca sexta miR-6095
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttctat 8
         |||||||
Sbjct: 8 tttctat 2
>hsa-miR-4482-3p MIMAT0020958 Homo sapiens miR-4482-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctat 8
         |||||||
Sbjct: 1 tttctat 7
>gma-miR4352a MIMAT0018241 Glycine max miR4352a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atttcta 7
         |||||||
Sbjct: 1 atttcta 7
>tca-miR-3821-3p MIMAT0018669 Tribolium castaneum miR-3821-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atttcta 7
         |||||||
Sbjct: 1 atttcta 7
>ppt-miR1027b MIMAT0005115 Physcomitrella patens miR1027b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctat 8
         |||||||
Sbjct: 1 tttctat 7
>ppt-miR1027a MIMAT0005114 Physcomitrella patens miR1027a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttctat 8
         |||||||
Sbjct: 1 tttctat 7
>ath-miR841a-3p MIMAT0032022 Arabidopsis thaliana miR841a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atttcta 7
         |||||||
Sbjct: 1 atttcta 7
>mghv-miR-M1-1-3p MIMAT0001564 Mouse gammaherpesvirus
         miR-M1-1-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atttcta 7
         |||||||
Sbjct: 7 atttcta 1
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 91
Number of successful extensions: 76
Number of sequences better than 100.0: 11
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)