BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-4
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9800-3p MIMAT0037018 Sus scrofa miR-9800-3p 14 20
atr-miR8613 MIMAT0033905 Amborella trichopoda miR8613 14 20
pma-miR-315 MIMAT0019539 Petromyzon marinus miR-315 14 20
hsa-miR-3671 MIMAT0018094 Homo sapiens miR-3671 14 20
cin-miR-4111-3p MIMAT0016700 Ciona intestinalis miR-4111-3p 14 20
nve-miR-2050-3p MIMAT0009825 Nematostella vectensis miR-2050-3p 14 20
ame-miR-2b MIMAT0037292 Apis mellifera miR-2b 12 80
chi-miR-3955-5p MIMAT0036203 Capra hircus miR-3955-5p 12 80
chi-miR-105b-5p MIMAT0035904 Capra hircus miR-105b-5p 12 80
chi-miR-105a MIMAT0035903 Capra hircus miR-105a 12 80
dvi-miR-9542a-3p MIMAT0035625 Drosophila virilis miR-9542a-3p 12 80
cfa-miR-8884 MIMAT0034386 Canis familiaris miR-8884 12 80
cfa-miR-8802 MIMAT0034292 Canis familiaris miR-8802 12 80
gra-miR8781b MIMAT0034254 Gossypium raimondii miR8781b 12 80
gra-miR8780 MIMAT0034230 Gossypium raimondii miR8780 12 80
gra-miR7484l MIMAT0034229 Gossypium raimondii miR7484l 12 80
gra-miR8779 MIMAT0034228 Gossypium raimondii miR8779 12 80
gra-miR8642 MIMAT0033998 Gossypium raimondii miR8642 12 80
sma-miR-8442-5p MIMAT0033590 Schistosoma mansoni miR-8442-5p 12 80
sma-miR-8431-3p MIMAT0033567 Schistosoma mansoni miR-8431-3p 12 80
str-miR-8402-3p MIMAT0033501 Strongyloides ratti miR-8402-3p 12 80
ppc-miR-8349-5p MIMAT0033246 Pristionchus pacificus miR-8349-5p 12 80
ppc-miR-8311-3p MIMAT0033153 Pristionchus pacificus miR-8311-3p 12 80
ssa-miR-722-5p MIMAT0032667 Salmo salar miR-722-5p 12 80
ssa-miR-301c-5p MIMAT0032596 Salmo salar miR-301c-5p 12 80
stu-miR8044-5p MIMAT0031223 Solanum tuberosum miR8044-5p 12 80
prd-miR-7883c-5p MIMAT0030696 Panagrellus redivivus miR-7883c-5p 12 80
prd-miR-7883b-5p MIMAT0030528 Panagrellus redivivus miR-7883b-5p 12 80
prd-miR-7883a-5p MIMAT0030526 Panagrellus redivivus miR-7883a-5p 12 80
hsa-miR-7853-5p MIMAT0030428 Homo sapiens miR-7853-5p 12 80
rgl-miR7797b MIMAT0032260 Rehmannia glutinosa miR7797b 12 80
bdi-miR7723b-5p MIMAT0030254 Brachypodium distachyon miR7723b-5p 12 80
bdi-miR7726b-5p MIMAT0030218 Brachypodium distachyon miR7726b-5p 12 80
bdi-miR7707-3p MIMAT0030132 Brachypodium distachyon miR7707-3p 12 80
mmu-miR-7650-3p MIMAT0029803 Mus musculus miR-7650-3p 12 80
crm-miR-7598 MIMAT0029615 Caenorhabditis remanei miR-7598 12 80
sbi-miR437x-3p MIMAT0026407 Sorghum bicolor miR437x-3p 12 80
cme-miR7129 MIMAT0026183 Cucumis melo miR7129 12 80
mmu-miR-7090-3p MIMAT0028087 Mus musculus miR-7090-3p 12 80
mmu-miR-7057-3p MIMAT0028019 Mus musculus miR-7057-3p 12 80
ptc-miR6455 MIMAT0025265 Populus trichocarpa miR6455 12 80
cca-miR6116-3p MIMAT0024563 Cynara cardunculus miR6116-3p 12 80
hco-miR-5898-5p MIMAT0023342 Haemonchus contortus miR-5898-5p 12 80
mtr-miR5753 MIMAT0023135 Medicago truncatula miR5753 12 80
ath-miR5645e MIMAT0022446 Arabidopsis thaliana miR5645e 12 80
ath-miR5645f MIMAT0022441 Arabidopsis thaliana miR5645f 12 80
ath-miR5645d MIMAT0022433 Arabidopsis thaliana miR5645d 12 80
ath-miR5645b MIMAT0022409 Arabidopsis thaliana miR5645b 12 80
ath-miR5645a MIMAT0022408 Arabidopsis thaliana miR5645a 12 80
rmi-miR-5336 MIMAT0021409 Rhipicephalus microplus miR-5336 12 80
mmu-miR-5116 MIMAT0020624 Mus musculus miR-5116 12 80
dme-miR-4951-3p MIMAT0020165 Drosophila melanogaster miR-4951-3p 12 80
oar-miR-3955-5p MIMAT0019245 Ovis aries miR-3955-5p 12 80
nlo-miR-315 MIMAT0018433 Nasonia longicornis miR-315 12 80
gma-miR4350 MIMAT0018239 Glycine max miR4350 12 80
cin-miR-4188-5p MIMAT0016806 Ciona intestinalis miR-4188-5p 12 80
cin-miR-4174-3p MIMAT0016783 Ciona intestinalis miR-4174-3p 12 80
nvi-miR-315 MIMAT0015689 Nasonia vitripennis miR-315 12 80
ath-miR773b-3p MIMAT0017736 Arabidopsis thaliana miR773b-3p 12 80
bmo-miR-3362 MIMAT0015548 Bombyx mori miR-3362 12 80
mmu-miR-3079-5p MIMAT0014866 Mus musculus miR-3079-5p 12 80
api-miR-315 MIMAT0014730 Acyrthosiphon pisum miR-315 12 80
cqu-miR-315 MIMAT0014365 Culex quinquefasciatus miR-315 12 80
aae-miR-315-5p MIMAT0014262 Aedes aegypti miR-315-5p 12 80
eca-miR-105 MIMAT0013193 Equus caballus miR-105 12 80
hvt-miR-H18-5p MIMAT0012874 Herpesvirus of miR-H18-5p 12 80
rno-miR-295-5p MIMAT0012849 Rattus norvegicus miR-295-5p 12 80
mdo-miR-599-5p MIMAT0026948 Monodelphis domestica miR-599-5p 12 80
isc-miR-315 MIMAT0012698 Ixodes scapularis miR-315 12 80
dpu-miR-315 MIMAT0012660 Daphnia pulex miR-315 12 80
bmo-miR-2753 MIMAT0012604 Bombyx mori miR-2753 12 80
mtr-miR2651 MIMAT0013423 Medicago truncatula miR2651 12 80
dsi-miR-961-5p MIMAT0012469 Drosophila simulans miR-961-5p 12 80
sme-miR-315-5p MIMAT0011282 Schmidtea mediterranea miR-315-5p 12 80
tca-miR-315 MIMAT0010096 Tribolium castaneum miR-315 12 80
cfa-miR-105b MIMAT0010198 Canis familiaris miR-105b 12 80
cfa-miR-105a MIMAT0009879 Canis familiaris miR-105a 12 80
nve-miR-2026-5p MIMAT0009770 Nematostella vectensis miR-2026-5p 12 80
sko-miR-315 MIMAT0009642 Saccoglossus kowalevskii miR-315 12 80
lgi-miR-315 MIMAT0009596 Lottia gigantea miR-315 12 80
cte-miR-315 MIMAT0009541 Capitella teleta miR-315 12 80
bta-miR-105a MIMAT0009217 Bos taurus miR-105a 12 80
bta-miR-105b MIMAT0009216 Bos taurus miR-105b 12 80
dya-miR-315 MIMAT0009084 Drosophila yakuba miR-315 12 80
dwi-miR-315 MIMAT0009036 Drosophila willistoni miR-315 12 80
dvi-miR-315a MIMAT0008944 Drosophila virilis miR-315a 12 80
dvi-miR-315b MIMAT0008933 Drosophila virilis miR-315b 12 80
dvi-miR-2c-5p MIMAT0032044 Drosophila virilis miR-2c-5p 12 80
dsi-miR-315 MIMAT0008870 Drosophila simulans miR-315 12 80
dse-miR-315 MIMAT0008815 Drosophila sechellia miR-315 12 80
dpe-miR-315 MIMAT0008730 Drosophila persimilis miR-315 12 80
dmo-miR-315 MIMAT0008687 Drosophila mojavensis miR-315 12 80
dgr-miR-315 MIMAT0008604 Drosophila grimshawi miR-315 12 80
der-miR-315 MIMAT0008539 Drosophila erecta miR-315 12 80
dan-miR-315 MIMAT0008459 Drosophila ananassae miR-315 12 80
bmo-miR-2a-1-5p MIMAT0015271 Bombyx mori miR-2a-1-5p 12 80
cel-miR-1820-5p MIMAT0006587 Caenorhabditis elegans miR-1820-5p 12 80
mml-miR-599-5p MIMAT0026903 Macaca mulatta miR-599-5p 12 80
mml-miR-372-5p MIMAT0026858 Macaca mulatta miR-372-5p 12 80
dme-miR-961-5p MIMAT0005475 Drosophila melanogaster miR-961-5p 12 80
hsa-miR-607 MIMAT0003275 Homo sapiens miR-607 12 80
mne-miR-105 MIMAT0002457 Macaca nemestrina miR-105 12 80
lla-miR-105 MIMAT0002456 Lagothrix lagotricha miR-105 12 80
sla-miR-105 MIMAT0002455 Saguinus labiatus miR-105 12 80
mml-miR-105-5p MIMAT0002454 Macaca mulatta miR-105-5p 12 80
ptr-miR-105 MIMAT0002453 Pan troglodytes miR-105 12 80
ppa-miR-105 MIMAT0002452 Pan paniscus miR-105 12 80
ggo-miR-105 MIMAT0002451 Gorilla gorilla miR-105 12 80
ppy-miR-105 MIMAT0002450 Pongo pygmaeus miR-105 12 80
ssc-miR-105-2 MIMAT0002117 Sus scrofa miR-105-2 12 80
ssc-miR-105-1 MIMAT0002116 Sus scrofa miR-105-1 12 80
aga-miR-315 MIMAT0001521 Anopheles gambiae miR-315 12 80
ame-miR-315 MIMAT0001487 Apis mellifera miR-315 12 80
dps-miR-315 MIMAT0001261 Drosophila pseudoobscura miR-315 12 80
hsa-miR-372-5p MIMAT0026484 Homo sapiens miR-372-5p 12 80
dme-miR-2c-5p MIMAT0020845 Drosophila melanogaster miR-2c-5p 12 80
dme-miR-315-5p MIMAT0000407 Drosophila melanogaster miR-315-5p 12 80
mmu-miR-295-5p MIMAT0004575 Mus musculus miR-295-5p 12 80
hsa-miR-105-5p MIMAT0000102 Homo sapiens miR-105-5p 12 80
>ssc-miR-9800-3p MIMAT0037018 Sus scrofa miR-9800-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttgat 7
|||||||
Sbjct: 2 atttgat 8
>atr-miR8613 MIMAT0033905 Amborella trichopoda miR8613
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttgat 7
|||||||
Sbjct: 8 atttgat 2
>pma-miR-315 MIMAT0019539 Petromyzon marinus miR-315
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttgat 7
|||||||
Sbjct: 1 atttgat 7
>hsa-miR-3671 MIMAT0018094 Homo sapiens miR-3671
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttgat 7
|||||||
Sbjct: 7 atttgat 1
>cin-miR-4111-3p MIMAT0016700 Ciona intestinalis miR-4111-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttgat 7
|||||||
Sbjct: 1 atttgat 7
>nve-miR-2050-3p MIMAT0009825 Nematostella vectensis miR-2050-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttgat 7
|||||||
Sbjct: 1 atttgat 7
>ame-miR-2b MIMAT0037292 Apis mellifera miR-2b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 8 tttgat 3
>chi-miR-3955-5p MIMAT0036203 Capra hircus miR-3955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>chi-miR-105b-5p MIMAT0035904 Capra hircus miR-105b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>chi-miR-105a MIMAT0035903 Capra hircus miR-105a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>dvi-miR-9542a-3p MIMAT0035625 Drosophila virilis miR-9542a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>cfa-miR-8884 MIMAT0034386 Canis familiaris miR-8884
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>cfa-miR-8802 MIMAT0034292 Canis familiaris miR-8802
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 3 tttgat 8
>gra-miR8781b MIMAT0034254 Gossypium raimondii miR8781b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>gra-miR8780 MIMAT0034230 Gossypium raimondii miR8780
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>gra-miR7484l MIMAT0034229 Gossypium raimondii miR7484l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>gra-miR8779 MIMAT0034228 Gossypium raimondii miR8779
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>gra-miR8642 MIMAT0033998 Gossypium raimondii miR8642
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 8 tttgat 3
>sma-miR-8442-5p MIMAT0033590 Schistosoma mansoni miR-8442-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 6 tttgat 1
>sma-miR-8431-3p MIMAT0033567 Schistosoma mansoni miR-8431-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 3 atttga 8
>str-miR-8402-3p MIMAT0033501 Strongyloides ratti miR-8402-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>ppc-miR-8349-5p MIMAT0033246 Pristionchus pacificus miR-8349-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>ppc-miR-8311-3p MIMAT0033153 Pristionchus pacificus miR-8311-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>ssa-miR-722-5p MIMAT0032667 Salmo salar miR-722-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>ssa-miR-301c-5p MIMAT0032596 Salmo salar miR-301c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 3 tttgat 8
>stu-miR8044-5p MIMAT0031223 Solanum tuberosum miR8044-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>prd-miR-7883c-5p MIMAT0030696 Panagrellus redivivus
miR-7883c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>prd-miR-7883b-5p MIMAT0030528 Panagrellus redivivus
miR-7883b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>prd-miR-7883a-5p MIMAT0030526 Panagrellus redivivus
miR-7883a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>hsa-miR-7853-5p MIMAT0030428 Homo sapiens miR-7853-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>rgl-miR7797b MIMAT0032260 Rehmannia glutinosa miR7797b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>bdi-miR7723b-5p MIMAT0030254 Brachypodium distachyon
miR7723b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 3 tttgat 8
>bdi-miR7726b-5p MIMAT0030218 Brachypodium distachyon
miR7726b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>bdi-miR7707-3p MIMAT0030132 Brachypodium distachyon miR7707-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>mmu-miR-7650-3p MIMAT0029803 Mus musculus miR-7650-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 3 tttgat 8
>crm-miR-7598 MIMAT0029615 Caenorhabditis remanei miR-7598
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>sbi-miR437x-3p MIMAT0026407 Sorghum bicolor miR437x-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>cme-miR7129 MIMAT0026183 Cucumis melo miR7129
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>mmu-miR-7090-3p MIMAT0028087 Mus musculus miR-7090-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>mmu-miR-7057-3p MIMAT0028019 Mus musculus miR-7057-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 3 atttga 8
>ptc-miR6455 MIMAT0025265 Populus trichocarpa miR6455
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>cca-miR6116-3p MIMAT0024563 Cynara cardunculus miR6116-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 3 atttga 8
>hco-miR-5898-5p MIMAT0023342 Haemonchus contortus miR-5898-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>mtr-miR5753 MIMAT0023135 Medicago truncatula miR5753
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 3 tttgat 8
>ath-miR5645e MIMAT0022446 Arabidopsis thaliana miR5645e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>ath-miR5645f MIMAT0022441 Arabidopsis thaliana miR5645f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>ath-miR5645d MIMAT0022433 Arabidopsis thaliana miR5645d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>ath-miR5645b MIMAT0022409 Arabidopsis thaliana miR5645b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>ath-miR5645a MIMAT0022408 Arabidopsis thaliana miR5645a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 1 atttga 6
>rmi-miR-5336 MIMAT0021409 Rhipicephalus microplus miR-5336
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>mmu-miR-5116 MIMAT0020624 Mus musculus miR-5116
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>dme-miR-4951-3p MIMAT0020165 Drosophila melanogaster
miR-4951-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 8 tttgat 3
>oar-miR-3955-5p MIMAT0019245 Ovis aries miR-3955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>nlo-miR-315 MIMAT0018433 Nasonia longicornis miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>gma-miR4350 MIMAT0018239 Glycine max miR4350
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>cin-miR-4188-5p MIMAT0016806 Ciona intestinalis miR-4188-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>cin-miR-4174-3p MIMAT0016783 Ciona intestinalis miR-4174-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>nvi-miR-315 MIMAT0015689 Nasonia vitripennis miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>ath-miR773b-3p MIMAT0017736 Arabidopsis thaliana miR773b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>bmo-miR-3362 MIMAT0015548 Bombyx mori miR-3362
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 atttga 6
||||||
Sbjct: 3 atttga 8
>mmu-miR-3079-5p MIMAT0014866 Mus musculus miR-3079-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>api-miR-315 MIMAT0014730 Acyrthosiphon pisum miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>cqu-miR-315 MIMAT0014365 Culex quinquefasciatus miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>aae-miR-315-5p MIMAT0014262 Aedes aegypti miR-315-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>eca-miR-105 MIMAT0013193 Equus caballus miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>hvt-miR-H18-5p MIMAT0012874 Herpesvirus of miR-H18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 6 tttgat 1
>rno-miR-295-5p MIMAT0012849 Rattus norvegicus miR-295-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>mdo-miR-599-5p MIMAT0026948 Monodelphis domestica miR-599-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>isc-miR-315 MIMAT0012698 Ixodes scapularis miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dpu-miR-315 MIMAT0012660 Daphnia pulex miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>bmo-miR-2753 MIMAT0012604 Bombyx mori miR-2753
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>mtr-miR2651 MIMAT0013423 Medicago truncatula miR2651
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>dsi-miR-961-5p MIMAT0012469 Drosophila simulans miR-961-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>sme-miR-315-5p MIMAT0011282 Schmidtea mediterranea miR-315-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>tca-miR-315 MIMAT0010096 Tribolium castaneum miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>cfa-miR-105b MIMAT0010198 Canis familiaris miR-105b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>cfa-miR-105a MIMAT0009879 Canis familiaris miR-105a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>nve-miR-2026-5p MIMAT0009770 Nematostella vectensis miR-2026-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>sko-miR-315 MIMAT0009642 Saccoglossus kowalevskii miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>lgi-miR-315 MIMAT0009596 Lottia gigantea miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>cte-miR-315 MIMAT0009541 Capitella teleta miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>bta-miR-105a MIMAT0009217 Bos taurus miR-105a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>bta-miR-105b MIMAT0009216 Bos taurus miR-105b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>dya-miR-315 MIMAT0009084 Drosophila yakuba miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dwi-miR-315 MIMAT0009036 Drosophila willistoni miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dvi-miR-315a MIMAT0008944 Drosophila virilis miR-315a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dvi-miR-315b MIMAT0008933 Drosophila virilis miR-315b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dvi-miR-2c-5p MIMAT0032044 Drosophila virilis miR-2c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 8 tttgat 3
>dsi-miR-315 MIMAT0008870 Drosophila simulans miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dse-miR-315 MIMAT0008815 Drosophila sechellia miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dpe-miR-315 MIMAT0008730 Drosophila persimilis miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dmo-miR-315 MIMAT0008687 Drosophila mojavensis miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dgr-miR-315 MIMAT0008604 Drosophila grimshawi miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>der-miR-315 MIMAT0008539 Drosophila erecta miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dan-miR-315 MIMAT0008459 Drosophila ananassae miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>bmo-miR-2a-1-5p MIMAT0015271 Bombyx mori miR-2a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 8 tttgat 3
>cel-miR-1820-5p MIMAT0006587 Caenorhabditis elegans miR-1820-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>mml-miR-599-5p MIMAT0026903 Macaca mulatta miR-599-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>mml-miR-372-5p MIMAT0026858 Macaca mulatta miR-372-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>dme-miR-961-5p MIMAT0005475 Drosophila melanogaster miR-961-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 1 tttgat 6
>hsa-miR-607 MIMAT0003275 Homo sapiens miR-607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>mne-miR-105 MIMAT0002457 Macaca nemestrina miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>lla-miR-105 MIMAT0002456 Lagothrix lagotricha miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>sla-miR-105 MIMAT0002455 Saguinus labiatus miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>mml-miR-105-5p MIMAT0002454 Macaca mulatta miR-105-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>ptr-miR-105 MIMAT0002453 Pan troglodytes miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>ppa-miR-105 MIMAT0002452 Pan paniscus miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>ggo-miR-105 MIMAT0002451 Gorilla gorilla miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>ppy-miR-105 MIMAT0002450 Pongo pygmaeus miR-105
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>ssc-miR-105-2 MIMAT0002117 Sus scrofa miR-105-2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>ssc-miR-105-1 MIMAT0002116 Sus scrofa miR-105-1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
>aga-miR-315 MIMAT0001521 Anopheles gambiae miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>ame-miR-315 MIMAT0001487 Apis mellifera miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>dps-miR-315 MIMAT0001261 Drosophila pseudoobscura miR-315
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>hsa-miR-372-5p MIMAT0026484 Homo sapiens miR-372-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>dme-miR-2c-5p MIMAT0020845 Drosophila melanogaster miR-2c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttgat 7
||||||
Sbjct: 8 tttgat 3
>dme-miR-315-5p MIMAT0000407 Drosophila melanogaster miR-315-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttgat 7
||||||
Sbjct: 2 tttgat 7
>mmu-miR-295-5p MIMAT0004575 Mus musculus miR-295-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 8 atttga 3
>hsa-miR-105-5p MIMAT0000102 Homo sapiens miR-105-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 atttga 6
||||||
Sbjct: 6 atttga 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 145
Number of extensions: 139
Number of successful extensions: 119
Number of sequences better than 100.0: 119
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 119
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
