BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tumv-miR-s49
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p              16   6.9  
aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p              16   6.9  
ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p            16   6.9  
gra-miR482c MIMAT0034205 Gossypium raimondii miR482c                   14      27
str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p           14      27
str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p         14      27
hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p                  14      27
ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471                   14      27
mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352                        14      27
gma-miR393b MIMAT0023170 Glycine max miR393b                           14      27
mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p           14      27
hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p                  14      27
vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p                  14      27
aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241                    14      27
eca-miR-1892 MIMAT0012895 Equus caballus miR-1892                      14      27
mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a                 14      27
hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3                         14      27
mmu-miR-1892 MIMAT0007871 Mus musculus miR-1892                        14      27
mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p             14      27
ath-miR158b MIMAT0001014 Arabidopsis thaliana miR158b                  14      27
>aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 atttggga 8
         ||||||||
Sbjct: 8 atttggga 1
>aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 atttggga 8
         ||||||||
Sbjct: 8 atttggga 1
>ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 atttggga 8
         ||||||||
Sbjct: 8 atttggga 1
>gra-miR482c MIMAT0034205 Gossypium raimondii miR482c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 8 tttggga 2
>str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>gma-miR393b MIMAT0023170 Glycine max miR393b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 2 tttggga 8
>eca-miR-1892 MIMAT0012895 Equus caballus miR-1892
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atttggg 7
         |||||||
Sbjct: 1 atttggg 7
>mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>mmu-miR-1892 MIMAT0007871 Mus musculus miR-1892
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 atttggg 7
         |||||||
Sbjct: 1 atttggg 7
>mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 tttggga 8
         |||||||
Sbjct: 1 tttggga 7
>ath-miR158b MIMAT0001014 Arabidopsis thaliana miR158b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 atttggg 7
         |||||||
Sbjct: 8 atttggg 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 185
Number of extensions: 162
Number of successful extensions: 137
Number of sequences better than 100.0: 20
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)