BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s49
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p 16 6.9
aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p 16 6.9
ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p 16 6.9
gra-miR482c MIMAT0034205 Gossypium raimondii miR482c 14 27
str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p 14 27
str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p 14 27
hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p 14 27
ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471 14 27
mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352 14 27
gma-miR393b MIMAT0023170 Glycine max miR393b 14 27
mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p 14 27
hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p 14 27
vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p 14 27
aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241 14 27
eca-miR-1892 MIMAT0012895 Equus caballus miR-1892 14 27
mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a 14 27
hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3 14 27
mmu-miR-1892 MIMAT0007871 Mus musculus miR-1892 14 27
mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p 14 27
ath-miR158b MIMAT0001014 Arabidopsis thaliana miR158b 14 27
>aly-miR158b-3p MIMAT0017676 Arabidopsis lyrata miR158b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atttggga 8
||||||||
Sbjct: 8 atttggga 1
>aly-miR158a-3p MIMAT0017422 Arabidopsis lyrata miR158a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atttggga 8
||||||||
Sbjct: 8 atttggga 1
>ath-miR158a-3p MIMAT0000176 Arabidopsis thaliana miR158a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 atttggga 8
||||||||
Sbjct: 8 atttggga 1
>gra-miR482c MIMAT0034205 Gossypium raimondii miR482c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 tttggga 8
|||||||
Sbjct: 8 tttggga 2
>str-miR-8375-3p MIMAT0033393 Strongyloides ratti miR-8375-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>str-miR-7880p-3p MIMAT0033375 Strongyloides ratti miR-7880p-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>hsa-miR-6513-5p MIMAT0025482 Homo sapiens miR-6513-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>ptc-miR6471 MIMAT0025210 Populus trichocarpa miR6471
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>mmu-miR-6352 MIMAT0025095 Mus musculus miR-6352
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>gma-miR393b MIMAT0023170 Glycine max miR393b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>mtr-miR2643b-3p MIMAT0021250 Medicago truncatula miR2643b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>hsa-miR-3913-5p MIMAT0018187 Homo sapiens miR-3913-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>vvi-miR3630-3p MIMAT0018028 Vitis vinifera miR3630-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>aly-miR4241 MIMAT0017930 Arabidopsis lyrata miR4241
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 2 tttggga 8
>eca-miR-1892 MIMAT0012895 Equus caballus miR-1892
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttggg 7
|||||||
Sbjct: 1 atttggg 7
>mtr-miR2643a MIMAT0013411 Medicago truncatula miR2643a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>hsv2-miR-H3 MIMAT0010202 Herpes Simplex miR-H3
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>mmu-miR-1892 MIMAT0007871 Mus musculus miR-1892
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 atttggg 7
|||||||
Sbjct: 1 atttggg 7
>mtr-miR393b-3p MIMAT0022936 Medicago truncatula miR393b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 tttggga 8
|||||||
Sbjct: 1 tttggga 7
>ath-miR158b MIMAT0001014 Arabidopsis thaliana miR158b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 atttggg 7
|||||||
Sbjct: 8 atttggg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 185
Number of extensions: 162
Number of successful extensions: 137
Number of sequences better than 100.0: 20
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)