BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart2-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467 14 20
eca-miR-9018 MIMAT0034559 Equus caballus miR-9018 14 20
hhi-miR-737 MIMAT0030367 Hippoglossus hippoglossus miR-737 14 20
bdi-miR7714-5p MIMAT0030150 Brachypodium distachyon miR7714-5p 14 20
ame-miR-6006-3p MIMAT0023554 Apis mellifera miR-6006-3p 14 20
oan-miR-1422b-3p MIMAT0006886 Ornithorhynchus anatinus miR-1422b-3p 14 20
oan-miR-1422a-3p MIMAT0006880 Ornithorhynchus anatinus miR-1422a-3p 14 20
ebv-miR-BART2-5p MIMAT0001000 Epstein Barr miR-BART2-5p 14 20
tch-miR-9771o MIMAT0036614 Tupaia chinensis miR-9771o 12 80
tch-miR-9771j MIMAT0036557 Tupaia chinensis miR-9771j 12 80
nve-miR-9446 MIMAT0035407 Nematostella vectensis miR-9446 12 80
eca-miR-9084 MIMAT0034629 Equus caballus miR-9084 12 80
gra-miR8787 MIMAT0034241 Gossypium raimondii miR8787 12 80
atr-miR8608 MIMAT0033899 Amborella trichopoda miR8608 12 80
atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586 12 80
sma-miR-8423-5p MIMAT0033550 Schistosoma mansoni miR-8423-5p 12 80
sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p 12 80
stu-miR7990b MIMAT0030918 Solanum tuberosum miR7990b 12 80
stu-miR8001b-3p MIMAT0031200 Solanum tuberosum miR8001b-3p 12 80
bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p 12 80
lja-miR7535 MIMAT0029360 Lotus japonicus miR7535 12 80
ghr-miR7508 MIMAT0029155 Gossypium hirsutum miR7508 12 80
mdo-miR-7398u-3p MIMAT0028927 Monodelphis domestica miR-7398u-3p 12 80
mdo-miR-1544d-3p MIMAT0028755 Monodelphis domestica miR-1544d-3p 12 80
mdo-miR-1544e-3p MIMAT0031034 Monodelphis domestica miR-1544e-3p 12 80
mdo-miR-1544c-3p MIMAT0028747 Monodelphis domestica miR-1544c-3p 12 80
mdo-miR-1544b-3p MIMAT0028745 Monodelphis domestica miR-1544b-3p 12 80
mmu-miR-7214-5p MIMAT0028396 Mus musculus miR-7214-5p 12 80
sbi-miR6229-3p MIMAT0026435 Sorghum bicolor miR6229-3p 12 80
sma-miR-124a-5p MIMAT0025025 Schistosoma mansoni miR-124a-5p 12 80
ppe-miR6288a MIMAT0027320 Prunus persica miR6288a 12 80
ppe-miR6259 MIMAT0027275 Prunus persica miR6259 12 80
nta-miR6162 MIMAT0024777 Nicotiana tabacum miR6162 12 80
pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b 12 80
pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a 12 80
tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p 12 80
osa-miR5524 MIMAT0022159 Oryza sativa miR5524 12 80
gma-miR5380b MIMAT0021622 Glycine max miR5380b 12 80
gma-miR5380a MIMAT0021621 Glycine max miR5380a 12 80
gma-miR5379 MIMAT0021620 Glycine max miR5379 12 80
gma-miR5369 MIMAT0021603 Glycine max miR5369 12 80
dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster miR-4945-5p 12 80
hsa-miR-4668-3p MIMAT0019746 Homo sapiens miR-4668-3p 12 80
pma-miR-4547-5p MIMAT0019578 Petromyzon marinus miR-4547-5p 12 80
gma-miR4393a MIMAT0018308 Glycine max miR4393a 12 80
tca-miR-3825-5p MIMAT0018678 Tribolium castaneum miR-3825-5p 12 80
tca-miR-3822-3p MIMAT0018671 Tribolium castaneum miR-3822-3p 12 80
ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765 12 80
hsa-miR-3662 MIMAT0018083 Homo sapiens miR-3662 12 80
ath-miR3440b-5p MIMAT0017945 Arabidopsis thaliana miR3440b-5p 12 80
cin-miR-4211-5p MIMAT0016832 Ciona intestinalis miR-4211-5p 12 80
sja-miR-124-5p MIMAT0016262 Schistosoma japonicum miR-124-5p 12 80
aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p 12 80
hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13 12 80
bmo-miR-2810 MIMAT0013718 Bombyx mori miR-2810 12 80
dme-miR-2283-5p MIMAT0011791 Drosophila melanogaster miR-2283-5p 12 80
osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p 12 80
mdo-miR-1544a-3p MIMAT0026768 Monodelphis domestica miR-1544a-3p 12 80
mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p 12 80
oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus miR-1422m-3p 12 80
oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus miR-1422k-3p 12 80
oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus miR-1422c-3p 12 80
hsa-miR-1250-3p MIMAT0026740 Homo sapiens miR-1250-3p 12 80
mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p 12 80
mdv2-miR-M18-5p MIMAT0004458 Mareks disease miR-M18-5p 12 80
ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838 12 80
mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p 12 80
mmu-miR-694 MIMAT0003474 Mus musculus miR-694 12 80
hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p 12 80
>nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttct 7
|||||||
Sbjct: 2 attttct 8
>eca-miR-9018 MIMAT0034559 Equus caballus miR-9018
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttct 7
|||||||
Sbjct: 1 attttct 7
>hhi-miR-737 MIMAT0030367 Hippoglossus hippoglossus miR-737
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attttct 7
|||||||
Sbjct: 7 attttct 1
>bdi-miR7714-5p MIMAT0030150 Brachypodium distachyon miR7714-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttct 7
|||||||
Sbjct: 2 attttct 8
>ame-miR-6006-3p MIMAT0023554 Apis mellifera miR-6006-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttct 7
|||||||
Sbjct: 1 attttct 7
>oan-miR-1422b-3p MIMAT0006886 Ornithorhynchus anatinus
miR-1422b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attttct 7
|||||||
Sbjct: 7 attttct 1
>oan-miR-1422a-3p MIMAT0006880 Ornithorhynchus anatinus
miR-1422a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attttct 7
|||||||
Sbjct: 8 attttct 2
>ebv-miR-BART2-5p MIMAT0001000 Epstein Barr miR-BART2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttct 7
|||||||
Sbjct: 2 attttct 8
>tch-miR-9771o MIMAT0036614 Tupaia chinensis miR-9771o
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 6 ttttct 1
>tch-miR-9771j MIMAT0036557 Tupaia chinensis miR-9771j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 6 ttttct 1
>nve-miR-9446 MIMAT0035407 Nematostella vectensis miR-9446
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>eca-miR-9084 MIMAT0034629 Equus caballus miR-9084
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>gra-miR8787 MIMAT0034241 Gossypium raimondii miR8787
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>atr-miR8608 MIMAT0033899 Amborella trichopoda miR8608
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>atr-miR8586 MIMAT0033872 Amborella trichopoda miR8586
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>sma-miR-8423-5p MIMAT0033550 Schistosoma mansoni miR-8423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>stu-miR7990b MIMAT0030918 Solanum tuberosum miR7990b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>stu-miR8001b-3p MIMAT0031200 Solanum tuberosum miR8001b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 8 ttttct 3
>lja-miR7535 MIMAT0029360 Lotus japonicus miR7535
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>ghr-miR7508 MIMAT0029155 Gossypium hirsutum miR7508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 8 ttttct 3
>mdo-miR-7398u-3p MIMAT0028927 Monodelphis domestica
miR-7398u-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>mdo-miR-1544d-3p MIMAT0028755 Monodelphis domestica
miR-1544d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>mdo-miR-1544e-3p MIMAT0031034 Monodelphis domestica
miR-1544e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>mdo-miR-1544c-3p MIMAT0028747 Monodelphis domestica
miR-1544c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>mdo-miR-1544b-3p MIMAT0028745 Monodelphis domestica
miR-1544b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>mmu-miR-7214-5p MIMAT0028396 Mus musculus miR-7214-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>sbi-miR6229-3p MIMAT0026435 Sorghum bicolor miR6229-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>sma-miR-124a-5p MIMAT0025025 Schistosoma mansoni miR-124a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>ppe-miR6288a MIMAT0027320 Prunus persica miR6288a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 6 attttc 1
>ppe-miR6259 MIMAT0027275 Prunus persica miR6259
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 7 ttttct 2
>nta-miR6162 MIMAT0024777 Nicotiana tabacum miR6162
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 6 ttttct 1
>pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>tur-miR-5738-3p MIMAT0023111 Tetranychus urticae miR-5738-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>osa-miR5524 MIMAT0022159 Oryza sativa miR5524
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>gma-miR5380b MIMAT0021622 Glycine max miR5380b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 6 attttc 1
>gma-miR5380a MIMAT0021621 Glycine max miR5380a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 6 attttc 1
>gma-miR5379 MIMAT0021620 Glycine max miR5379
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>gma-miR5369 MIMAT0021603 Glycine max miR5369
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 8 ttttct 3
>dme-miR-4945-5p MIMAT0020155 Drosophila melanogaster
miR-4945-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>hsa-miR-4668-3p MIMAT0019746 Homo sapiens miR-4668-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 6 attttc 1
>pma-miR-4547-5p MIMAT0019578 Petromyzon marinus miR-4547-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>gma-miR4393a MIMAT0018308 Glycine max miR4393a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 8 ttttct 3
>tca-miR-3825-5p MIMAT0018678 Tribolium castaneum miR-3825-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>tca-miR-3822-3p MIMAT0018671 Tribolium castaneum miR-3822-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>ame-miR-3765 MIMAT0018539 Apis mellifera miR-3765
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 8 ttttct 3
>hsa-miR-3662 MIMAT0018083 Homo sapiens miR-3662
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 6 attttc 1
>ath-miR3440b-5p MIMAT0017945 Arabidopsis thaliana miR3440b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>cin-miR-4211-5p MIMAT0016832 Ciona intestinalis miR-4211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 8 ttttct 3
>sja-miR-124-5p MIMAT0016262 Schistosoma japonicum miR-124-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>aly-miR838-3p MIMAT0017622 Arabidopsis lyrata miR838-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>hvt-miR-H13 MIMAT0012865 Herpesvirus of miR-H13
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>bmo-miR-2810 MIMAT0013718 Bombyx mori miR-2810
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>dme-miR-2283-5p MIMAT0011791 Drosophila melanogaster
miR-2283-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 6 attttc 1
>osa-miR1860-5p MIMAT0007793 Oryza sativa miR1860-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 6 ttttct 1
>mdo-miR-1544a-3p MIMAT0026768 Monodelphis domestica
miR-1544a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>mdv1-miR-M9-5p MIMAT0005979 Mareks disease miR-M9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>oan-miR-1422m-3p MIMAT0007100 Ornithorhynchus anatinus
miR-1422m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>oan-miR-1422k-3p MIMAT0006896 Ornithorhynchus anatinus
miR-1422k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 6 ttttct 1
>oan-miR-1422c-3p MIMAT0006892 Ornithorhynchus anatinus
miR-1422c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttct 7
||||||
Sbjct: 6 ttttct 1
>hsa-miR-1250-3p MIMAT0026740 Homo sapiens miR-1250-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttc 6
||||||
Sbjct: 3 attttc 8
>mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>mdv2-miR-M18-5p MIMAT0004458 Mareks disease miR-M18-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
>ath-miR838 MIMAT0004260 Arabidopsis thaliana miR838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 1 ttttct 6
>mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>mmu-miR-694 MIMAT0003474 Mus musculus miR-694
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttc 6
||||||
Sbjct: 8 attttc 3
>hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttct 7
||||||
Sbjct: 3 ttttct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 84
Number of extensions: 76
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)