BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR5-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9051 MIMAT0034595 Equus caballus miR-9051 14 20
sma-miR-8404-3p MIMAT0033509 Schistosoma mansoni miR-8404-3p 14 20
bma-miR-5845 MIMAT0026343 Brugia malayi miR-5845 14 20
mtr-miR5296 MIMAT0021367 Medicago truncatula miR5296 14 20
bfl-miR-4875c-3p MIMAT0020457 Branchiostoma floridae miR-4875c-3p 14 20
ath-miR866-3p MIMAT0004316 Arabidopsis thaliana miR866-3p 14 20
tae-miR9781 MIMAT0036995 Triticum aestivum miR9781 12 80
chi-miR-1814 MIMAT0036000 Capra hircus miR-1814 12 80
chi-miR-1468-3p MIMAT0035970 Capra hircus miR-1468-3p 12 80
bra-miR403-5p MIMAT0035858 Brassica rapa miR403-5p 12 80
bra-miR9564-5p MIMAT0035687 Brassica rapa miR9564-5p 12 80
sly-miR9474-3p MIMAT0035464 Solanum lycopersicum miR9474-3p 12 80
bol-miR9409 MIMAT0035364 Brassica oleracea miR9409 12 80
efu-miR-375 MIMAT0035180 Eptesicus fuscus miR-375 12 80
efu-miR-9235b MIMAT0034850 Eptesicus fuscus miR-9235b 12 80
eca-miR-3613 MIMAT0034742 Equus caballus miR-3613 12 80
gra-miR8718 MIMAT0034261 Gossypium raimondii miR8718 12 80
gra-miR8766 MIMAT0034200 Gossypium raimondii miR8766 12 80
sma-miR-8483-3p MIMAT0033688 Schistosoma mansoni miR-8483-3p 12 80
sma-miR-8418-5p MIMAT0033540 Schistosoma mansoni miR-8418-5p 12 80
str-miR-8381-3p MIMAT0033419 Strongyloides ratti miR-8381-3p 12 80
ppc-miR-8345-3p MIMAT0033237 Pristionchus pacificus miR-8345-3p 12 80
aly-miR403b-5p MIMAT0031386 Arabidopsis lyrata miR403b-5p 12 80
prd-miR-7965-3p MIMAT0030831 Panagrellus redivivus miR-7965-3p 12 80
prd-miR-7879-3p MIMAT0030515 Panagrellus redivivus miR-7879-3p 12 80
bdi-miR7723b-5p MIMAT0030254 Brachypodium distachyon miR7723b-5p 12 80
bdi-miR5174c-3p MIMAT0030104 Brachypodium distachyon miR5174c-3p 12 80
bta-miR-3613b MIMAT0029948 Bos taurus miR-3613b 12 80
ipu-miR-7554 MIMAT0029550 Ictalurus punctatus miR-7554 12 80
mml-miR-548i-3p MIMAT0028323 Macaca mulatta miR-548i-3p 12 80
gma-miR1515b MIMAT0024926 Glycine max miR1515b 12 80
hco-miR-5932 MIMAT0023424 Haemonchus contortus miR-5932 12 80
hco-miR-5897c MIMAT0023380 Haemonchus contortus miR-5897c 12 80
hco-miR-5897b MIMAT0023364 Haemonchus contortus miR-5897b 12 80
hco-miR-5897a MIMAT0023341 Haemonchus contortus miR-5897a 12 80
gma-miR5761b MIMAT0023173 Glycine max miR5761b 12 80
gma-miR5761a MIMAT0023157 Glycine max miR5761a 12 80
mtr-miR5753 MIMAT0023135 Medicago truncatula miR5753 12 80
bra-miR5711 MIMAT0023006 Brassica rapa miR5711 12 80
cin-miR-5611-3p MIMAT0022350 Ciona intestinalis miR-5611-3p 12 80
cel-miR-5545-3p MIMAT0022182 Caenorhabditis elegans miR-5545-3p 12 80
mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234 12 80
bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p 12 80
hsa-miR-5010-3p MIMAT0021044 Homo sapiens miR-5010-3p 12 80
cel-miR-4805-3p MIMAT0019987 Caenorhabditis elegans miR-4805-3p 12 80
hsa-miR-3613-3p MIMAT0017991 Homo sapiens miR-3613-3p 12 80
cin-miR-4119-5p MIMAT0016710 Ciona intestinalis miR-4119-5p 12 80
cin-miR-4105-5p MIMAT0016692 Ciona intestinalis miR-4105-5p 12 80
aly-miR857-3p MIMAT0017644 Arabidopsis lyrata miR857-3p 12 80
aly-miR403a-5p MIMAT0017585 Arabidopsis lyrata miR403a-5p 12 80
bmo-miR-3391-3p MIMAT0015595 Bombyx mori miR-3391-3p 12 80
api-miR-3037 MIMAT0014774 Acyrthosiphon pisum miR-3037 12 80
rlcv-miR-rL1-29-3p MIMAT0016953 Rhesus lymphocryptovirus miR-rL1... 12 80
osa-miR2923 MIMAT0014054 Oryza sativa miR2923 12 80
rno-miR-294 MIMAT0012848 Rattus norvegicus miR-294 12 80
dps-miR-2570-3p MIMAT0012411 Drosophila pseudoobscura miR-2570-3p 12 80
dps-miR-2528 MIMAT0012306 Drosophila pseudoobscura miR-2528 12 80
dme-miR-2500-3p MIMAT0012215 Drosophila melanogaster miR-2500-3p 12 80
bta-miR-1814c MIMAT0011984 Bos taurus miR-1814c 12 80
bta-miR-2325a MIMAT0011854 Bos taurus miR-2325a 12 80
bta-miR-2310 MIMAT0011822 Bos taurus miR-2310 12 80
bta-miR-2293 MIMAT0011801 Bos taurus miR-2293 12 80
nve-miR-2041a-5p MIMAT0009804 Nematostella vectensis miR-2041a-5p 12 80
bta-miR-375 MIMAT0009303 Bos taurus miR-375 12 80
dya-miR-274 MIMAT0009052 Drosophila yakuba miR-274 12 80
dwi-miR-274 MIMAT0009023 Drosophila willistoni miR-274 12 80
dse-miR-274 MIMAT0008828 Drosophila sechellia miR-274 12 80
dpe-miR-274 MIMAT0008758 Drosophila persimilis miR-274 12 80
der-miR-274 MIMAT0008521 Drosophila erecta miR-274 12 80
dan-miR-274 MIMAT0008448 Drosophila ananassae miR-274 12 80
gma-miR1515a MIMAT0007374 Glycine max miR1515a 12 80
ath-miR857 MIMAT0004301 Arabidopsis thaliana miR857 12 80
mdo-miR-375 MIMAT0004138 Monodelphis domestica miR-375 12 80
ebv-miR-BART19-3p MIMAT0003718 Epstein Barr miR-BART19-3p 12 80
mmu-miR-669b-5p MIMAT0003476 Mus musculus miR-669b-5p 12 80
hsa-miR-1468-3p MIMAT0026638 Homo sapiens miR-1468-3p 12 80
dps-miR-274 MIMAT0001237 Drosophila pseudoobscura miR-274 12 80
ath-miR403-5p MIMAT0031914 Arabidopsis thaliana miR403-5p 12 80
cbr-lsy-6 MIMAT0000767 Caenorhabditis briggsae lsy-6 12 80
cel-lsy-6-3p MIMAT0000749 Caenorhabditis elegans lsy-6-3p 12 80
>eca-miR-9051 MIMAT0034595 Equus caballus miR-9051
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttgt 7
|||||||
Sbjct: 2 attttgt 8
>sma-miR-8404-3p MIMAT0033509 Schistosoma mansoni miR-8404-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttgt 7
|||||||
Sbjct: 2 attttgt 8
>bma-miR-5845 MIMAT0026343 Brugia malayi miR-5845
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttgt 7
|||||||
Sbjct: 1 attttgt 7
>mtr-miR5296 MIMAT0021367 Medicago truncatula miR5296
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 attttgt 7
|||||||
Sbjct: 1 attttgt 7
>bfl-miR-4875c-3p MIMAT0020457 Branchiostoma floridae
miR-4875c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attttgt 7
|||||||
Sbjct: 8 attttgt 2
>ath-miR866-3p MIMAT0004316 Arabidopsis thaliana miR866-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 attttgt 7
|||||||
Sbjct: 7 attttgt 1
>tae-miR9781 MIMAT0036995 Triticum aestivum miR9781
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>chi-miR-1814 MIMAT0036000 Capra hircus miR-1814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 2 ttttgt 7
>chi-miR-1468-3p MIMAT0035970 Capra hircus miR-1468-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttg 6
||||||
Sbjct: 8 attttg 3
>bra-miR403-5p MIMAT0035858 Brassica rapa miR403-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>bra-miR9564-5p MIMAT0035687 Brassica rapa miR9564-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 6 ttttgt 1
>sly-miR9474-3p MIMAT0035464 Solanum lycopersicum miR9474-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>bol-miR9409 MIMAT0035364 Brassica oleracea miR9409
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>efu-miR-375 MIMAT0035180 Eptesicus fuscus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>efu-miR-9235b MIMAT0034850 Eptesicus fuscus miR-9235b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>eca-miR-3613 MIMAT0034742 Equus caballus miR-3613
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 6 ttttgt 1
>gra-miR8718 MIMAT0034261 Gossypium raimondii miR8718
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 1 attttg 6
>gra-miR8766 MIMAT0034200 Gossypium raimondii miR8766
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>sma-miR-8483-3p MIMAT0033688 Schistosoma mansoni miR-8483-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>sma-miR-8418-5p MIMAT0033540 Schistosoma mansoni miR-8418-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>str-miR-8381-3p MIMAT0033419 Strongyloides ratti miR-8381-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>ppc-miR-8345-3p MIMAT0033237 Pristionchus pacificus miR-8345-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>aly-miR403b-5p MIMAT0031386 Arabidopsis lyrata miR403b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>prd-miR-7965-3p MIMAT0030831 Panagrellus redivivus miR-7965-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>prd-miR-7879-3p MIMAT0030515 Panagrellus redivivus miR-7879-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>bdi-miR7723b-5p MIMAT0030254 Brachypodium distachyon
miR7723b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 1 attttg 6
>bdi-miR5174c-3p MIMAT0030104 Brachypodium distachyon
miR5174c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>bta-miR-3613b MIMAT0029948 Bos taurus miR-3613b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 8 ttttgt 3
>ipu-miR-7554 MIMAT0029550 Ictalurus punctatus miR-7554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>mml-miR-548i-3p MIMAT0028323 Macaca mulatta miR-548i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttg 6
||||||
Sbjct: 6 attttg 1
>gma-miR1515b MIMAT0024926 Glycine max miR1515b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>hco-miR-5932 MIMAT0023424 Haemonchus contortus miR-5932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 1 attttg 6
>hco-miR-5897c MIMAT0023380 Haemonchus contortus miR-5897c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>hco-miR-5897b MIMAT0023364 Haemonchus contortus miR-5897b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>hco-miR-5897a MIMAT0023341 Haemonchus contortus miR-5897a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>gma-miR5761b MIMAT0023173 Glycine max miR5761b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>gma-miR5761a MIMAT0023157 Glycine max miR5761a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>mtr-miR5753 MIMAT0023135 Medicago truncatula miR5753
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 1 attttg 6
>bra-miR5711 MIMAT0023006 Brassica rapa miR5711
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>cin-miR-5611-3p MIMAT0022350 Ciona intestinalis miR-5611-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttg 6
||||||
Sbjct: 6 attttg 1
>cel-miR-5545-3p MIMAT0022182 Caenorhabditis elegans miR-5545-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>mtr-miR5234 MIMAT0021219 Medicago truncatula miR5234
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>bdi-miR827-5p MIMAT0027075 Brachypodium distachyon miR827-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>hsa-miR-5010-3p MIMAT0021044 Homo sapiens miR-5010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>cel-miR-4805-3p MIMAT0019987 Caenorhabditis elegans miR-4805-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>hsa-miR-3613-3p MIMAT0017991 Homo sapiens miR-3613-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 6 ttttgt 1
>cin-miR-4119-5p MIMAT0016710 Ciona intestinalis miR-4119-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>cin-miR-4105-5p MIMAT0016692 Ciona intestinalis miR-4105-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 6 ttttgt 1
>aly-miR857-3p MIMAT0017644 Arabidopsis lyrata miR857-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>aly-miR403a-5p MIMAT0017585 Arabidopsis lyrata miR403a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>bmo-miR-3391-3p MIMAT0015595 Bombyx mori miR-3391-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 8 ttttgt 3
>api-miR-3037 MIMAT0014774 Acyrthosiphon pisum miR-3037
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 8 ttttgt 3
>rlcv-miR-rL1-29-3p MIMAT0016953 Rhesus lymphocryptovirus
miR-rL1-29-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>osa-miR2923 MIMAT0014054 Oryza sativa miR2923
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ttttgt 7
||||||
Sbjct: 8 ttttgt 3
>rno-miR-294 MIMAT0012848 Rattus norvegicus miR-294
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttg 6
||||||
Sbjct: 8 attttg 3
>dps-miR-2570-3p MIMAT0012411 Drosophila pseudoobscura
miR-2570-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dps-miR-2528 MIMAT0012306 Drosophila pseudoobscura miR-2528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dme-miR-2500-3p MIMAT0012215 Drosophila melanogaster
miR-2500-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>bta-miR-1814c MIMAT0011984 Bos taurus miR-1814c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 2 ttttgt 7
>bta-miR-2325a MIMAT0011854 Bos taurus miR-2325a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 2 ttttgt 7
>bta-miR-2310 MIMAT0011822 Bos taurus miR-2310
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 2 ttttgt 7
>bta-miR-2293 MIMAT0011801 Bos taurus miR-2293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>nve-miR-2041a-5p MIMAT0009804 Nematostella vectensis
miR-2041a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 1 attttg 6
>bta-miR-375 MIMAT0009303 Bos taurus miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dya-miR-274 MIMAT0009052 Drosophila yakuba miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dwi-miR-274 MIMAT0009023 Drosophila willistoni miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dse-miR-274 MIMAT0008828 Drosophila sechellia miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dpe-miR-274 MIMAT0008758 Drosophila persimilis miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>der-miR-274 MIMAT0008521 Drosophila erecta miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>dan-miR-274 MIMAT0008448 Drosophila ananassae miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>gma-miR1515a MIMAT0007374 Glycine max miR1515a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 attttg 6
||||||
Sbjct: 3 attttg 8
>ath-miR857 MIMAT0004301 Arabidopsis thaliana miR857
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>mdo-miR-375 MIMAT0004138 Monodelphis domestica miR-375
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>ebv-miR-BART19-3p MIMAT0003718 Epstein Barr miR-BART19-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>mmu-miR-669b-5p MIMAT0003476 Mus musculus miR-669b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>hsa-miR-1468-3p MIMAT0026638 Homo sapiens miR-1468-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 attttg 6
||||||
Sbjct: 8 attttg 3
>dps-miR-274 MIMAT0001237 Drosophila pseudoobscura miR-274
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>ath-miR403-5p MIMAT0031914 Arabidopsis thaliana miR403-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 3 ttttgt 8
>cbr-lsy-6 MIMAT0000767 Caenorhabditis briggsae lsy-6
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
>cel-lsy-6-3p MIMAT0000749 Caenorhabditis elegans lsy-6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ttttgt 7
||||||
Sbjct: 1 ttttgt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 102
Number of extensions: 96
Number of successful extensions: 80
Number of sequences better than 100.0: 80
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 80
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
