BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv68-miR-h1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3871-3p MIMAT0018835 Tribolium castaneum miR-3871-3p 14 20
tca-miR-3837-5p MIMAT0018708 Tribolium castaneum miR-3837-5p 14 20
dme-miR-985-3p MIMAT0005502 Drosophila melanogaster miR-985-3p 14 20
ssc-miR-9800-3p MIMAT0037018 Sus scrofa miR-9800-3p 12 80
tch-miR-9771n MIMAT0036610 Tupaia chinensis miR-9771n 12 80
bdi-miR530b MIMAT0035527 Brachypodium distachyon miR530b 12 80
bdi-miR530a MIMAT0035526 Brachypodium distachyon miR530a 12 80
pxy-miR-8537b-3p MIMAT0033792 Plutella xylostella miR-8537b-3p 12 80
sma-miR-8437-3p MIMAT0033579 Schistosoma mansoni miR-8437-3p 12 80
sma-miR-8407-3p MIMAT0033519 Schistosoma mansoni miR-8407-3p 12 80
sma-miR-8406-5p MIMAT0033516 Schistosoma mansoni miR-8406-5p 12 80
str-miR-8393-5p MIMAT0033458 Strongyloides ratti miR-8393-5p 12 80
ssa-miR-7552a-3p MIMAT0032753 Salmo salar miR-7552a-3p 12 80
ssa-miR-203b-3p MIMAT0032487 Salmo salar miR-203b-3p 12 80
ppe-miR6291c-5p MIMAT0031544 Prunus persica miR6291c-5p 12 80
stu-miR7990a MIMAT0030864 Solanum tuberosum miR7990a 12 80
bta-miR-2284ac MIMAT0030447 Bos taurus miR-2284ac 12 80
ipu-miR-7554 MIMAT0029550 Ictalurus punctatus miR-7554 12 80
mes-miR530b MIMAT0029299 Manihot esculenta miR530b 12 80
mes-miR530a MIMAT0029298 Manihot esculenta miR530a 12 80
oan-miR-7432-5p MIMAT0029014 Ornithorhynchus anatinus miR-7432-5p 12 80
mdo-miR-7307-3p MIMAT0028611 Monodelphis domestica miR-7307-3p 12 80
cme-miR530a MIMAT0026182 Cucumis melo miR530a 12 80
cme-miR530b MIMAT0026104 Cucumis melo miR530b 12 80
htu-miR530 MIMAT0025521 Helianthus tuberosus miR530 12 80
lus-miR530b MIMAT0027169 Linum usitatissimum miR530b 12 80
lus-miR530a MIMAT0027162 Linum usitatissimum miR530a 12 80
nta-miR6020b MIMAT0023587 Nicotiana tabacum miR6020b 12 80
nta-miR6020a-5p MIMAT0023584 Nicotiana tabacum miR6020a-5p 12 80
tca-miR-6009-5p MIMAT0023559 Tribolium castaneum miR-6009-5p 12 80
osa-miR2873c MIMAT0023311 Oryza sativa miR2873c 12 80
gma-miR530e MIMAT0023209 Glycine max miR530e 12 80
gma-miR530d MIMAT0023199 Glycine max miR530d 12 80
gma-miR530c MIMAT0023197 Glycine max miR530c 12 80
mtr-miR530 MIMAT0023156 Medicago truncatula miR530 12 80
gma-miR530b MIMAT0022463 Glycine max miR530b 12 80
hsa-miR-664b-3p MIMAT0022272 Homo sapiens miR-664b-3p 12 80
mtr-miR5561-5p MIMAT0022227 Medicago truncatula miR5561-5p 12 80
cel-miR-5550-3p MIMAT0022192 Caenorhabditis elegans miR-5550-3p 12 80
pti-miR5472 MIMAT0022105 Phaeodactylum tricornutum miR5472 12 80
gma-miR5374-3p MIMAT0032125 Glycine max miR5374-3p 12 80
gma-miR530a MIMAT0021003 Glycine max miR530a 12 80
sko-miR-4827a MIMAT0020034 Saccoglossus kowalevskii miR-4827a 12 80
tcc-miR530b MIMAT0020447 Theobroma cacao miR530b 12 80
tcc-miR530a MIMAT0020446 Theobroma cacao miR530a 12 80
hsa-miR-4694-3p MIMAT0019787 Homo sapiens miR-4694-3p 12 80
csi-miR530b MIMAT0018483 Citrus sinensis miR530b 12 80
csi-miR530a MIMAT0018482 Citrus sinensis miR530a 12 80
gma-miR4352b MIMAT0018276 Glycine max miR4352b 12 80
tca-miR-3849-5p MIMAT0018752 Tribolium castaneum miR-3849-5p 12 80
aly-miR4248c MIMAT0017939 Arabidopsis lyrata miR4248c 12 80
aly-miR4248b MIMAT0017938 Arabidopsis lyrata miR4248b 12 80
aly-miR4248a MIMAT0017937 Arabidopsis lyrata miR4248a 12 80
aly-miR4232 MIMAT0017921 Arabidopsis lyrata miR4232 12 80
cin-miR-4207-3p MIMAT0016828 Ciona intestinalis miR-4207-3p 12 80
cin-miR-4125-5p MIMAT0016719 Ciona intestinalis miR-4125-5p 12 80
cin-miR-4118-3p MIMAT0016709 Ciona intestinalis miR-4118-3p 12 80
ahy-miR3512 MIMAT0016336 Arachis hypogaea miR3512 12 80
ppy-miR-579 MIMAT0016021 Pongo pygmaeus miR-579 12 80
aly-miR2112-5p MIMAT0017661 Arabidopsis lyrata miR2112-5p 12 80
bmo-miR-3384-5p MIMAT0015579 Bombyx mori miR-3384-5p 12 80
hma-miR-3003b-3p MIMAT0014670 Hydra magnipapillata miR-3003b-3p 12 80
aqc-miR530 MIMAT0012593 Aquilegia caerulea miR530 12 80
mtr-miR2633 MIMAT0013399 Medicago truncatula miR2633 12 80
mtr-miR2595 MIMAT0013285 Medicago truncatula miR2595 12 80
dps-miR-2564-5p MIMAT0012390 Drosophila pseudoobscura miR-2564-5p 12 80
cel-miR-2216-5p MIMAT0011447 Caenorhabditis elegans miR-2216-5p 12 80
ath-miR2112-5p MIMAT0011154 Arabidopsis thaliana miR2112-5p 12 80
ame-miR-985 MIMAT0010118 Apis mellifera miR-985 12 80
nve-miR-2049-5p MIMAT0009822 Nematostella vectensis miR-2049-5p 12 80
ptr-miR-579 MIMAT0008252 Pan troglodytes miR-579 12 80
mml-miR-579 MIMAT0006440 Macaca mulatta miR-579 12 80
ptc-miR530b MIMAT0005998 Populus trichocarpa miR530b 12 80
ptc-miR530a MIMAT0005997 Populus trichocarpa miR530a 12 80
oan-miR-1392-3p MIMAT0007188 Ornithorhynchus anatinus miR-1392-3p 12 80
hsa-miR-513b-3p MIMAT0026749 Homo sapiens miR-513b-3p 12 80
hsa-miR-1252-3p MIMAT0026744 Homo sapiens miR-1252-3p 12 80
hsa-miR-1250-3p MIMAT0026740 Homo sapiens miR-1250-3p 12 80
ppt-miR1077-5p MIMAT0005208 Physcomitrella patens miR1077-5p 12 80
hsa-miR-579-3p MIMAT0003244 Homo sapiens miR-579-3p 12 80
osa-miR530-5p MIMAT0006787 Oryza sativa miR530-5p 12 80
mghv-miR-M1-9 MIMAT0001573 Mouse gammaherpesvirus miR-M1-9 12 80
>tca-miR-3871-3p MIMAT0018835 Tribolium castaneum miR-3871-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaatgt 7
|||||||
Sbjct: 8 caaatgt 2
>tca-miR-3837-5p MIMAT0018708 Tribolium castaneum miR-3837-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaatgt 7
|||||||
Sbjct: 8 caaatgt 2
>dme-miR-985-3p MIMAT0005502 Drosophila melanogaster miR-985-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaatgt 7
|||||||
Sbjct: 1 caaatgt 7
>ssc-miR-9800-3p MIMAT0037018 Sus scrofa miR-9800-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 6 caaatg 1
>tch-miR-9771n MIMAT0036610 Tupaia chinensis miR-9771n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>bdi-miR530b MIMAT0035527 Brachypodium distachyon miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>bdi-miR530a MIMAT0035526 Brachypodium distachyon miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>pxy-miR-8537b-3p MIMAT0033792 Plutella xylostella miR-8537b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>sma-miR-8437-3p MIMAT0033579 Schistosoma mansoni miR-8437-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>sma-miR-8407-3p MIMAT0033519 Schistosoma mansoni miR-8407-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>sma-miR-8406-5p MIMAT0033516 Schistosoma mansoni miR-8406-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>str-miR-8393-5p MIMAT0033458 Strongyloides ratti miR-8393-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>ssa-miR-7552a-3p MIMAT0032753 Salmo salar miR-7552a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>ssa-miR-203b-3p MIMAT0032487 Salmo salar miR-203b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 3 aaatgt 8
>ppe-miR6291c-5p MIMAT0031544 Prunus persica miR6291c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>stu-miR7990a MIMAT0030864 Solanum tuberosum miR7990a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>bta-miR-2284ac MIMAT0030447 Bos taurus miR-2284ac
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>ipu-miR-7554 MIMAT0029550 Ictalurus punctatus miR-7554
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 6 aaatgt 1
>mes-miR530b MIMAT0029299 Manihot esculenta miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>mes-miR530a MIMAT0029298 Manihot esculenta miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>oan-miR-7432-5p MIMAT0029014 Ornithorhynchus anatinus
miR-7432-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>mdo-miR-7307-3p MIMAT0028611 Monodelphis domestica miR-7307-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>cme-miR530a MIMAT0026182 Cucumis melo miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>cme-miR530b MIMAT0026104 Cucumis melo miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>htu-miR530 MIMAT0025521 Helianthus tuberosus miR530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>lus-miR530b MIMAT0027169 Linum usitatissimum miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>lus-miR530a MIMAT0027162 Linum usitatissimum miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>nta-miR6020b MIMAT0023587 Nicotiana tabacum miR6020b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>nta-miR6020a-5p MIMAT0023584 Nicotiana tabacum miR6020a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>tca-miR-6009-5p MIMAT0023559 Tribolium castaneum miR-6009-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>osa-miR2873c MIMAT0023311 Oryza sativa miR2873c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>gma-miR530e MIMAT0023209 Glycine max miR530e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>gma-miR530d MIMAT0023199 Glycine max miR530d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>gma-miR530c MIMAT0023197 Glycine max miR530c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>mtr-miR530 MIMAT0023156 Medicago truncatula miR530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>gma-miR530b MIMAT0022463 Glycine max miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>hsa-miR-664b-3p MIMAT0022272 Homo sapiens miR-664b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>mtr-miR5561-5p MIMAT0022227 Medicago truncatula miR5561-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 6 caaatg 1
>cel-miR-5550-3p MIMAT0022192 Caenorhabditis elegans miR-5550-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>pti-miR5472 MIMAT0022105 Phaeodactylum tricornutum miR5472
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 2 aaatgt 7
>gma-miR5374-3p MIMAT0032125 Glycine max miR5374-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>gma-miR530a MIMAT0021003 Glycine max miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>sko-miR-4827a MIMAT0020034 Saccoglossus kowalevskii miR-4827a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>tcc-miR530b MIMAT0020447 Theobroma cacao miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>tcc-miR530a MIMAT0020446 Theobroma cacao miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>hsa-miR-4694-3p MIMAT0019787 Homo sapiens miR-4694-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>csi-miR530b MIMAT0018483 Citrus sinensis miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>csi-miR530a MIMAT0018482 Citrus sinensis miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>gma-miR4352b MIMAT0018276 Glycine max miR4352b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 3 aaatgt 8
>tca-miR-3849-5p MIMAT0018752 Tribolium castaneum miR-3849-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>aly-miR4248c MIMAT0017939 Arabidopsis lyrata miR4248c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 6 aaatgt 1
>aly-miR4248b MIMAT0017938 Arabidopsis lyrata miR4248b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 6 aaatgt 1
>aly-miR4248a MIMAT0017937 Arabidopsis lyrata miR4248a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 6 aaatgt 1
>aly-miR4232 MIMAT0017921 Arabidopsis lyrata miR4232
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>cin-miR-4207-3p MIMAT0016828 Ciona intestinalis miR-4207-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>cin-miR-4125-5p MIMAT0016719 Ciona intestinalis miR-4125-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>cin-miR-4118-3p MIMAT0016709 Ciona intestinalis miR-4118-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 3 aaatgt 8
>ahy-miR3512 MIMAT0016336 Arachis hypogaea miR3512
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>ppy-miR-579 MIMAT0016021 Pongo pygmaeus miR-579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>aly-miR2112-5p MIMAT0017661 Arabidopsis lyrata miR2112-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>bmo-miR-3384-5p MIMAT0015579 Bombyx mori miR-3384-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 3 aaatgt 8
>hma-miR-3003b-3p MIMAT0014670 Hydra magnipapillata miR-3003b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 3 aaatgt 8
>aqc-miR530 MIMAT0012593 Aquilegia caerulea miR530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>mtr-miR2633 MIMAT0013399 Medicago truncatula miR2633
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>mtr-miR2595 MIMAT0013285 Medicago truncatula miR2595
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 7 aaatgt 2
>dps-miR-2564-5p MIMAT0012390 Drosophila pseudoobscura
miR-2564-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 3 aaatgt 8
>cel-miR-2216-5p MIMAT0011447 Caenorhabditis elegans miR-2216-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
>ath-miR2112-5p MIMAT0011154 Arabidopsis thaliana miR2112-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>ame-miR-985 MIMAT0010118 Apis mellifera miR-985
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 2 aaatgt 7
>nve-miR-2049-5p MIMAT0009822 Nematostella vectensis miR-2049-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>ptr-miR-579 MIMAT0008252 Pan troglodytes miR-579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>mml-miR-579 MIMAT0006440 Macaca mulatta miR-579
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>ptc-miR530b MIMAT0005998 Populus trichocarpa miR530b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>ptc-miR530a MIMAT0005997 Populus trichocarpa miR530a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>oan-miR-1392-3p MIMAT0007188 Ornithorhynchus anatinus
miR-1392-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 6 caaatg 1
>hsa-miR-513b-3p MIMAT0026749 Homo sapiens miR-513b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaatgt 7
||||||
Sbjct: 1 aaatgt 6
>hsa-miR-1252-3p MIMAT0026744 Homo sapiens miR-1252-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 1 caaatg 6
>hsa-miR-1250-3p MIMAT0026740 Homo sapiens miR-1250-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 6 aaatgt 1
>ppt-miR1077-5p MIMAT0005208 Physcomitrella patens miR1077-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatg 6
||||||
Sbjct: 3 caaatg 8
>hsa-miR-579-3p MIMAT0003244 Homo sapiens miR-579-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>osa-miR530-5p MIMAT0006787 Oryza sativa miR530-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatg 6
||||||
Sbjct: 8 caaatg 3
>mghv-miR-M1-9 MIMAT0001573 Mouse gammaherpesvirus miR-M1-9
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaatgt 7
||||||
Sbjct: 8 aaatgt 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 121
Number of extensions: 118
Number of successful extensions: 82
Number of sequences better than 100.0: 82
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 82
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
