BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s32
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ata-miR9674b-3p MIMAT0037257 Aegilops tauschii miR9674b-3p 14 20
oha-miR-10b-3p MIMAT0036663 Ophiophagus hannah miR-10b-3p 14 20
oha-miR-10a-3p MIMAT0036661 Ophiophagus hannah miR-10a-3p 14 20
chi-miR-10a-3p MIMAT0035912 Capra hircus miR-10a-3p 14 20
pxy-miR-8489a-3p MIMAT0033697 Plutella xylostella miR-8489a-3p 14 20
ssa-miR-10d-3p MIMAT0032300 Salmo salar miR-10d-3p 14 20
ssa-miR-10a-2-3p MIMAT0032294 Salmo salar miR-10a-2-3p 14 20
ssa-miR-10a-3p MIMAT0032293 Salmo salar miR-10a-3p 14 20
bbe-miR-10a-3p MIMAT0031573 Branchiostoma belcheri miR-10a-3p 14 20
mse-miR-10a MIMAT0024449 Manduca sexta miR-10a 14 20
cgr-miR-10a-3p MIMAT0023736 Cricetulus griseus miR-10a-3p 14 20
aca-miR-10c-3p MIMAT0021722 Anolis carolinensis miR-10c-3p 14 20
bdi-miR5064 MIMAT0020571 Brachypodium distachyon miR5064 14 20
aly-miR4249 MIMAT0017940 Arabidopsis lyrata miR4249 14 20
cqu-miR-10-3p MIMAT0014405 Culex quinquefasciatus miR-10-3p 14 20
ssc-miR-10a-3p MIMAT0022954 Sus scrofa miR-10a-3p 14 20
bfl-miR-10a-3p MIMAT0009467 Branchiostoma floridae miR-10a-3p 14 20
dvi-miR-10-3p MIMAT0032083 Drosophila virilis miR-10-3p 14 20
tca-miR-10-3p MIMAT0019101 Tribolium castaneum miR-10-3p 14 20
gma-miR482a-5p MIMAT0017337 Glycine max miR482a-5p 14 20
oan-miR-10a-3p MIMAT0007123 Ornithorhynchus anatinus miR-10a-3p 14 20
bmo-miR-10-3p MIMAT0015226 Bombyx mori miR-10-3p 14 20
dre-miR-10a-3p MIMAT0003391 Danio rerio miR-10a-3p 14 20
rno-miR-10a-3p MIMAT0004709 Rattus norvegicus miR-10a-3p 14 20
mmu-miR-10a-3p MIMAT0004659 Mus musculus miR-10a-3p 14 20
hsa-miR-10a-3p MIMAT0004555 Homo sapiens miR-10a-3p 14 20
dme-miR-10-3p MIMAT0012531 Drosophila melanogaster miR-10-3p 14 20
ata-miR9674c-5p MIMAT0037194 Aegilops tauschii miR9674c-5p 12 80
gma-miR9753 MIMAT0036384 Glycine max miR9753 12 80
dvi-miR-9546-3p MIMAT0035637 Drosophila virilis miR-9546-3p 12 80
gsa-miR-10a-3p MIMAT0035279 Gyrodactylus salaris miR-10a-3p 12 80
gsa-miR-96b-3p MIMAT0035271 Gyrodactylus salaris miR-96b-3p 12 80
gra-miR8719 MIMAT0034108 Gossypium raimondii miR8719 12 80
gra-miR8678 MIMAT0034049 Gossypium raimondii miR8678 12 80
pxy-miR-10-3p MIMAT0033794 Plutella xylostella miR-10-3p 12 80
sma-miR-8436-3p MIMAT0033577 Schistosoma mansoni miR-8436-3p 12 80
ppc-miR-8356a-5p MIMAT0033274 Pristionchus pacificus miR-8356a-5p 12 80
ppc-miR-8356b-5p MIMAT0033144 Pristionchus pacificus miR-8356b-5p 12 80
stu-miR8037 MIMAT0030947 Solanum tuberosum miR8037 12 80
stu-miR7990b MIMAT0030918 Solanum tuberosum miR7990b 12 80
prd-miR-7957c-3p MIMAT0030823 Panagrellus redivivus miR-7957c-3p 12 80
prd-miR-7957d-5p MIMAT0030800 Panagrellus redivivus miR-7957d-5p 12 80
prd-miR-7932-5p MIMAT0030716 Panagrellus redivivus miR-7932-5p 12 80
prd-miR-7957b-3p MIMAT0030669 Panagrellus redivivus miR-7957b-3p 12 80
prd-miR-7957b-5p MIMAT0030668 Panagrellus redivivus miR-7957b-5p 12 80
lja-miR7519 MIMAT0029334 Lotus japonicus miR7519 12 80
mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p 12 80
mmu-miR-7216-3p MIMAT0028401 Mus musculus miR-7216-3p 12 80
sbi-miR5568g-5p MIMAT0026465 Sorghum bicolor miR5568g-5p 12 80
ptc-miR6459a-3p MIMAT0025185 Populus trichocarpa miR6459a-3p 12 80
sma-miR-10-3p MIMAT0025024 Schistosoma mansoni miR-10-3p 12 80
hco-miR-5893 MIMAT0023332 Haemonchus contortus miR-5893 12 80
aca-miR-10a-3p MIMAT0021718 Anolis carolinensis miR-10a-3p 12 80
asu-miR-5360-3p MIMAT0021583 Ascaris suum miR-5360-3p 12 80
mtr-miR5290 MIMAT0021353 Medicago truncatula miR5290 12 80
mtr-miR5236e MIMAT0021226 Medicago truncatula miR5236e 12 80
mtr-miR5236d MIMAT0021225 Medicago truncatula miR5236d 12 80
mtr-miR5236c MIMAT0021224 Medicago truncatula miR5236c 12 80
mtr-miR5236b MIMAT0021223 Medicago truncatula miR5236b 12 80
mtr-miR5236a MIMAT0021222 Medicago truncatula miR5236a 12 80
bdi-miR5175a MIMAT0020719 Brachypodium distachyon miR5175a 12 80
hsa-miR-5002-5p MIMAT0021023 Homo sapiens miR-5002-5p 12 80
hsa-miR-4760-3p MIMAT0019907 Homo sapiens miR-4760-3p 12 80
cin-miR-4216-3p MIMAT0016838 Ciona intestinalis miR-4216-3p 12 80
rno-miR-3551-3p MIMAT0017810 Rattus norvegicus miR-3551-3p 12 80
sja-miR-10-3p MIMAT0016254 Schistosoma japonicum miR-10-3p 12 80
bmo-miR-3425 MIMAT0015633 Bombyx mori miR-3425 12 80
bmo-miR-3261 MIMAT0015445 Bombyx mori miR-3261 12 80
cqu-miR-2941-2-5p MIMAT0016971 Culex quinquefasciatus miR-2941-2-5p 12 80
bmo-miR-2814 MIMAT0013723 Bombyx mori miR-2814 12 80
sme-miR-2148-5p MIMAT0011224 Schmidtea mediterranea miR-2148-5p 12 80
lmi-miR-10-3p MIMAT0010145 Locusta migratoria miR-10-3p 12 80
dvi-miR-283-3p MIMAT0032061 Drosophila virilis miR-283-3p 12 80
osa-miR1866-3p MIMAT0009212 Oryza sativa miR1866-3p 12 80
mml-miR-10a-3p MIMAT0026797 Macaca mulatta miR-10a-3p 12 80
gga-miR-10a-3p MIMAT0007732 Gallus gallus miR-10a-3p 12 80
ath-miR865-5p MIMAT0004313 Arabidopsis thaliana miR865-5p 12 80
ath-miR829-3p.2 MIMAT0004246 Arabidopsis thaliana miR829-3p.2 12 80
mdo-miR-10a-3p MIMAT0026648 Monodelphis domestica miR-10a-3p 12 80
bmo-miR-263b-3p MIMAT0015229 Bombyx mori miR-263b-3p 12 80
ppt-miR1217-3p MIMAT0003906 Physcomitrella patens miR1217-3p 12 80
rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus miR-rL1-... 12 80
dre-miR-10c-3p MIMAT0031935 Danio rerio miR-10c-3p 12 80
ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p 12 80
dme-miR-283-3p MIMAT0020810 Drosophila melanogaster miR-283-3p 12 80
cel-miR-66-3p MIMAT0020315 Caenorhabditis elegans miR-66-3p 12 80
>ata-miR9674b-3p MIMAT0037257 Aegilops tauschii miR9674b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaattc 7
|||||||
Sbjct: 8 caaattc 2
>oha-miR-10b-3p MIMAT0036663 Ophiophagus hannah miR-10b-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>oha-miR-10a-3p MIMAT0036661 Ophiophagus hannah miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>chi-miR-10a-3p MIMAT0035912 Capra hircus miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>pxy-miR-8489a-3p MIMAT0033697 Plutella xylostella miR-8489a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>ssa-miR-10d-3p MIMAT0032300 Salmo salar miR-10d-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>ssa-miR-10a-2-3p MIMAT0032294 Salmo salar miR-10a-2-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>ssa-miR-10a-3p MIMAT0032293 Salmo salar miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>bbe-miR-10a-3p MIMAT0031573 Branchiostoma belcheri miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>mse-miR-10a MIMAT0024449 Manduca sexta miR-10a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>cgr-miR-10a-3p MIMAT0023736 Cricetulus griseus miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>aca-miR-10c-3p MIMAT0021722 Anolis carolinensis miR-10c-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 2 caaattc 8
>bdi-miR5064 MIMAT0020571 Brachypodium distachyon miR5064
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaattc 7
|||||||
Sbjct: 8 caaattc 2
>aly-miR4249 MIMAT0017940 Arabidopsis lyrata miR4249
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaattc 7
|||||||
Sbjct: 8 caaattc 2
>cqu-miR-10-3p MIMAT0014405 Culex quinquefasciatus miR-10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>ssc-miR-10a-3p MIMAT0022954 Sus scrofa miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>bfl-miR-10a-3p MIMAT0009467 Branchiostoma floridae miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>dvi-miR-10-3p MIMAT0032083 Drosophila virilis miR-10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>tca-miR-10-3p MIMAT0019101 Tribolium castaneum miR-10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>gma-miR482a-5p MIMAT0017337 Glycine max miR482a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaattc 7
|||||||
Sbjct: 8 caaattc 2
>oan-miR-10a-3p MIMAT0007123 Ornithorhynchus anatinus miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>bmo-miR-10-3p MIMAT0015226 Bombyx mori miR-10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>dre-miR-10a-3p MIMAT0003391 Danio rerio miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>rno-miR-10a-3p MIMAT0004709 Rattus norvegicus miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>mmu-miR-10a-3p MIMAT0004659 Mus musculus miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>hsa-miR-10a-3p MIMAT0004555 Homo sapiens miR-10a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>dme-miR-10-3p MIMAT0012531 Drosophila melanogaster miR-10-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaattc 7
|||||||
Sbjct: 1 caaattc 7
>ata-miR9674c-5p MIMAT0037194 Aegilops tauschii miR9674c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>gma-miR9753 MIMAT0036384 Glycine max miR9753
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 8 caaatt 3
>dvi-miR-9546-3p MIMAT0035637 Drosophila virilis miR-9546-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 8 caaatt 3
>gsa-miR-10a-3p MIMAT0035279 Gyrodactylus salaris miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>gsa-miR-96b-3p MIMAT0035271 Gyrodactylus salaris miR-96b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 3 caaatt 8
>gra-miR8719 MIMAT0034108 Gossypium raimondii miR8719
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 1 caaatt 6
>gra-miR8678 MIMAT0034049 Gossypium raimondii miR8678
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>pxy-miR-10-3p MIMAT0033794 Plutella xylostella miR-10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>sma-miR-8436-3p MIMAT0033577 Schistosoma mansoni miR-8436-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>ppc-miR-8356a-5p MIMAT0033274 Pristionchus pacificus
miR-8356a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>ppc-miR-8356b-5p MIMAT0033144 Pristionchus pacificus
miR-8356b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>stu-miR8037 MIMAT0030947 Solanum tuberosum miR8037
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 8 caaatt 3
>stu-miR7990b MIMAT0030918 Solanum tuberosum miR7990b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 6 aaattc 1
>prd-miR-7957c-3p MIMAT0030823 Panagrellus redivivus
miR-7957c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 8 caaatt 3
>prd-miR-7957d-5p MIMAT0030800 Panagrellus redivivus
miR-7957d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>prd-miR-7932-5p MIMAT0030716 Panagrellus redivivus miR-7932-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 6 aaattc 1
>prd-miR-7957b-3p MIMAT0030669 Panagrellus redivivus
miR-7957b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 8 caaatt 3
>prd-miR-7957b-5p MIMAT0030668 Panagrellus redivivus
miR-7957b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>lja-miR7519 MIMAT0029334 Lotus japonicus miR7519
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 1 caaatt 6
>mdo-miR-7282-5p MIMAT0028538 Monodelphis domestica miR-7282-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>mmu-miR-7216-3p MIMAT0028401 Mus musculus miR-7216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>sbi-miR5568g-5p MIMAT0026465 Sorghum bicolor miR5568g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 1 caaatt 6
>ptc-miR6459a-3p MIMAT0025185 Populus trichocarpa miR6459a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>sma-miR-10-3p MIMAT0025024 Schistosoma mansoni miR-10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>hco-miR-5893 MIMAT0023332 Haemonchus contortus miR-5893
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 3 caaatt 8
>aca-miR-10a-3p MIMAT0021718 Anolis carolinensis miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>asu-miR-5360-3p MIMAT0021583 Ascaris suum miR-5360-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>mtr-miR5290 MIMAT0021353 Medicago truncatula miR5290
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>mtr-miR5236e MIMAT0021226 Medicago truncatula miR5236e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>mtr-miR5236d MIMAT0021225 Medicago truncatula miR5236d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>mtr-miR5236c MIMAT0021224 Medicago truncatula miR5236c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>mtr-miR5236b MIMAT0021223 Medicago truncatula miR5236b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>mtr-miR5236a MIMAT0021222 Medicago truncatula miR5236a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>bdi-miR5175a MIMAT0020719 Brachypodium distachyon miR5175a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>hsa-miR-5002-5p MIMAT0021023 Homo sapiens miR-5002-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>hsa-miR-4760-3p MIMAT0019907 Homo sapiens miR-4760-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>cin-miR-4216-3p MIMAT0016838 Ciona intestinalis miR-4216-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 8 caaatt 3
>rno-miR-3551-3p MIMAT0017810 Rattus norvegicus miR-3551-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 3 aaattc 8
>sja-miR-10-3p MIMAT0016254 Schistosoma japonicum miR-10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>bmo-miR-3425 MIMAT0015633 Bombyx mori miR-3425
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>bmo-miR-3261 MIMAT0015445 Bombyx mori miR-3261
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>cqu-miR-2941-2-5p MIMAT0016971 Culex quinquefasciatus
miR-2941-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 7 aaattc 2
>bmo-miR-2814 MIMAT0013723 Bombyx mori miR-2814
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 3 caaatt 8
>sme-miR-2148-5p MIMAT0011224 Schmidtea mediterranea miR-2148-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 3 aaattc 8
>lmi-miR-10-3p MIMAT0010145 Locusta migratoria miR-10-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>dvi-miR-283-3p MIMAT0032061 Drosophila virilis miR-283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>osa-miR1866-3p MIMAT0009212 Oryza sativa miR1866-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 3 aaattc 8
>mml-miR-10a-3p MIMAT0026797 Macaca mulatta miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>gga-miR-10a-3p MIMAT0007732 Gallus gallus miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>ath-miR865-5p MIMAT0004313 Arabidopsis thaliana miR865-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>ath-miR829-3p.2 MIMAT0004246 Arabidopsis thaliana miR829-3p.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caaatt 6
||||||
Sbjct: 1 caaatt 6
>mdo-miR-10a-3p MIMAT0026648 Monodelphis domestica miR-10a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>bmo-miR-263b-3p MIMAT0015229 Bombyx mori miR-263b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>ppt-miR1217-3p MIMAT0003906 Physcomitrella patens miR1217-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caaatt 6
||||||
Sbjct: 6 caaatt 1
>rlcv-miR-rL1-2-5p MIMAT0019085 Rhesus lymphocryptovirus
miR-rL1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>dre-miR-10c-3p MIMAT0031935 Danio rerio miR-10c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>ebv-miR-BHRF1-2-5p MIMAT0000996 Epstein Barr miR-BHRF1-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
>dme-miR-283-3p MIMAT0020810 Drosophila melanogaster miR-283-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aaattc 7
||||||
Sbjct: 8 aaattc 3
>cel-miR-66-3p MIMAT0020315 Caenorhabditis elegans miR-66-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aaattc 7
||||||
Sbjct: 1 aaattc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 131
Number of extensions: 104
Number of successful extensions: 86
Number of sequences better than 100.0: 86
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 86
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
