BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv2-miR-m30
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p                 16   6.9  
ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p             14      27
ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p             14      27
chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p                    14      27
prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus miR-5358b-5p       14      27
mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360                        14      27
hco-miR-5886b MIMAT0023462 Haemonchus contortus miR-5886b              14      27
gma-miR5785 MIMAT0023191 Glycine max miR5785                           14      27
hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659                        14      27
cin-miR-4061-3p MIMAT0016611 Ciona intestinalis miR-4061-3p            14      27
rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592                   14      27
ppy-miR-609 MIMAT0016050 Pongo pygmaeus miR-609                        14      27
ssc-miR-505 MIMAT0013961 Sus scrofa miR-505                            14      27
oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus miR-1398-3p      14      27
kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated miR-K...    14      27
>mdv2-miR-M30-5p MIMAT0004477 Mareks disease miR-M30-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 caacactc 8
         ||||||||
Sbjct: 1 caacactc 8
>ata-miR2275c-5p MIMAT0037226 Aegilops tauschii miR2275c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 7 caacact 1
>ata-miR2275a-5p MIMAT0037110 Aegilops tauschii miR2275a-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacactc 8
         |||||||
Sbjct: 8 aacactc 2
>chi-miR-505-3p MIMAT0036269 Capra hircus miR-505-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caacact 7
         |||||||
Sbjct: 2 caacact 8
>prd-miR-5358b-5p MIMAT0030572 Panagrellus redivivus
         miR-5358b-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 8 caacact 2
>mmu-miR-6360 MIMAT0025103 Mus musculus miR-6360
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 8 caacact 2
>hco-miR-5886b MIMAT0023462 Haemonchus contortus miR-5886b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 aacactc 8
         |||||||
Sbjct: 2 aacactc 8
>gma-miR5785 MIMAT0023191 Glycine max miR5785
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 8 caacact 2
>hsa-miR-3659 MIMAT0018080 Homo sapiens miR-3659
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacactc 8
         |||||||
Sbjct: 8 aacactc 2
>cin-miR-4061-3p MIMAT0016611 Ciona intestinalis miR-4061-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 aacactc 8
         |||||||
Sbjct: 1 aacactc 7
>rno-miR-3592 MIMAT0017895 Rattus norvegicus miR-3592
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 8 caacact 2
>ppy-miR-609 MIMAT0016050 Pongo pygmaeus miR-609
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 aacactc 8
         |||||||
Sbjct: 8 aacactc 2
>ssc-miR-505 MIMAT0013961 Sus scrofa miR-505
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caacact 7
         |||||||
Sbjct: 2 caacact 8
>oan-miR-1398-3p MIMAT0026760 Ornithorhynchus anatinus
         miR-1398-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 7 caacact 1
>kshv-miR-K12-10a-3p MIMAT0002179 Kaposi sarcoma-associated
         miR-K12-10a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caacact 7
         |||||||
Sbjct: 8 caacact 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 237
Number of extensions: 221
Number of successful extensions: 144
Number of sequences better than 100.0: 15
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)