BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tch-miR-296-3p MIMAT0036504 Tupaia chinensis miR-296-3p 14 27
gma-miR9757 MIMAT0036390 Glycine max miR9757 14 27
chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p 14 27
sma-miR-8478-5p MIMAT0033677 Schistosoma mansoni miR-8478-5p 14 27
ppc-miR-8233-5p MIMAT0032918 Pristionchus pacificus miR-8233-5p 14 27
ssa-miR-729-5p MIMAT0032677 Salmo salar miR-729-5p 14 27
gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p 14 27
ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296 14 27
cgr-miR-652-5p MIMAT0023991 Cricetulus griseus miR-652-5p 14 27
cgr-miR-296 MIMAT0023880 Cricetulus griseus miR-296 14 27
ssc-miR-652 MIMAT0017964 Sus scrofa miR-652 14 27
ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p 14 27
ppy-miR-296-3p MIMAT0015810 Pongo pygmaeus miR-296-3p 14 27
eca-miR-296 MIMAT0013107 Equus caballus miR-296 14 27
bta-miR-296-3p MIMAT0009273 Bos taurus miR-296-3p 14 27
dvi-miR-219-3p MIMAT0032098 Drosophila virilis miR-219-3p 14 27
ptr-miR-296 MIMAT0008079 Pan troglodytes miR-296 14 27
mml-miR-296-3p MIMAT0006252 Macaca mulatta miR-296-3p 14 27
rno-miR-652-5p MIMAT0017321 Rattus norvegicus miR-652-5p 14 27
ppt-miR1074 MIMAT0005204 Physcomitrella patens miR1074 14 27
mmu-miR-652-5p MIMAT0017260 Mus musculus miR-652-5p 14 27
hsa-miR-652-5p MIMAT0022709 Homo sapiens miR-652-5p 14 27
ath-miR398c-5p MIMAT0031912 Arabidopsis thaliana miR398c-5p 14 27
ath-miR398b-5p MIMAT0031911 Arabidopsis thaliana miR398b-5p 14 27
rno-miR-296-3p MIMAT0004742 Rattus norvegicus miR-296-3p 14 27
hsa-miR-296-3p MIMAT0004679 Homo sapiens miR-296-3p 14 27
mmu-miR-296-3p MIMAT0004576 Mus musculus miR-296-3p 14 27
dme-miR-219-3p MIMAT0020803 Drosophila melanogaster miR-219-3p 14 27
>tch-miR-296-3p MIMAT0036504 Tupaia chinensis miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>gma-miR9757 MIMAT0036390 Glycine max miR9757
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaccct 7
|||||||
Sbjct: 1 caaccct 7
>chi-miR-296-3p MIMAT0036111 Capra hircus miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>sma-miR-8478-5p MIMAT0033677 Schistosoma mansoni miR-8478-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aaccctt 8
|||||||
Sbjct: 8 aaccctt 2
>ppc-miR-8233-5p MIMAT0032918 Pristionchus pacificus miR-8233-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>ssa-miR-729-5p MIMAT0032677 Salmo salar miR-729-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>gga-miR-7449-3p MIMAT0029053 Gallus gallus miR-7449-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>ggo-miR-296 MIMAT0024290 Gorilla gorilla miR-296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>cgr-miR-652-5p MIMAT0023991 Cricetulus griseus miR-652-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaccct 7
|||||||
Sbjct: 1 caaccct 7
>cgr-miR-296 MIMAT0023880 Cricetulus griseus miR-296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>ssc-miR-652 MIMAT0017964 Sus scrofa miR-652
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaccct 7
|||||||
Sbjct: 2 caaccct 8
>ssc-miR-296-3p MIMAT0022958 Sus scrofa miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>ppy-miR-296-3p MIMAT0015810 Pongo pygmaeus miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>eca-miR-296 MIMAT0013107 Equus caballus miR-296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>bta-miR-296-3p MIMAT0009273 Bos taurus miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>dvi-miR-219-3p MIMAT0032098 Drosophila virilis miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>ptr-miR-296 MIMAT0008079 Pan troglodytes miR-296
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>mml-miR-296-3p MIMAT0006252 Macaca mulatta miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>rno-miR-652-5p MIMAT0017321 Rattus norvegicus miR-652-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaccct 7
|||||||
Sbjct: 2 caaccct 8
>ppt-miR1074 MIMAT0005204 Physcomitrella patens miR1074
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>mmu-miR-652-5p MIMAT0017260 Mus musculus miR-652-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaccct 7
|||||||
Sbjct: 1 caaccct 7
>hsa-miR-652-5p MIMAT0022709 Homo sapiens miR-652-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caaccct 7
|||||||
Sbjct: 1 caaccct 7
>ath-miR398c-5p MIMAT0031912 Arabidopsis thaliana miR398c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>ath-miR398b-5p MIMAT0031911 Arabidopsis thaliana miR398b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
>rno-miR-296-3p MIMAT0004742 Rattus norvegicus miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>hsa-miR-296-3p MIMAT0004679 Homo sapiens miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>mmu-miR-296-3p MIMAT0004576 Mus musculus miR-296-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 8 caaccct 2
>dme-miR-219-3p MIMAT0020803 Drosophila melanogaster miR-219-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caaccct 7
|||||||
Sbjct: 7 caaccct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 113
Number of successful extensions: 96
Number of sequences better than 100.0: 28
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
