BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hpv16-miR-h3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-29a-1-5p MIMAT0036876 Ophiophagus hannah miR-29a-1-5p 14 27
chi-miR-217-3p MIMAT0036065 Capra hircus miR-217-3p 14 27
prd-miR-5594-5p MIMAT0030764 Panagrellus redivivus miR-5594-5p 14 27
bdi-miR7716-5p MIMAT0030154 Brachypodium distachyon miR7716-5p 14 27
bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p 14 27
aca-miR-217-3p MIMAT0021879 Anolis carolinensis miR-217-3p 14 27
aly-miR4224 MIMAT0017912 Arabidopsis lyrata miR4224 14 27
esi-miR3465-5p MIMAT0017791 Ectocarpus siliculosus miR3465-5p 14 27
tgu-miR-217-3p MIMAT0027010 Taeniopygia guttata miR-217-3p 14 27
dps-miR-2547-3p MIMAT0012355 Drosophila pseudoobscura miR-2547-3p 14 27
osa-miR2092-5p MIMAT0010048 Oryza sativa miR2092-5p 14 27
oan-miR-217-3p MIMAT0007222 Ornithorhynchus anatinus miR-217-3p 14 27
oan-miR-1358 MIMAT0006990 Ornithorhynchus anatinus miR-1358 14 27
ath-miR837-5p MIMAT0004258 Arabidopsis thaliana miR837-5p 14 27
sme-miR-7a-3p MIMAT0012096 Schmidtea mediterranea miR-7a-3p 14 27
rno-miR-217-3p MIMAT0017161 Rattus norvegicus miR-217-3p 14 27
mmu-miR-217-3p MIMAT0017072 Mus musculus miR-217-3p 14 27
>oha-miR-29a-1-5p MIMAT0036876 Ophiophagus hannah miR-29a-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aactgat 8
|||||||
Sbjct: 1 aactgat 7
>chi-miR-217-3p MIMAT0036065 Capra hircus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 8 aactgat 2
>prd-miR-5594-5p MIMAT0030764 Panagrellus redivivus miR-5594-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 7 aactgat 1
>bdi-miR7716-5p MIMAT0030154 Brachypodium distachyon miR7716-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caactga 7
|||||||
Sbjct: 7 caactga 1
>bta-miR-6122-5p MIMAT0024594 Bos taurus miR-6122-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caactga 7
|||||||
Sbjct: 7 caactga 1
>aca-miR-217-3p MIMAT0021879 Anolis carolinensis miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 8 aactgat 2
>aly-miR4224 MIMAT0017912 Arabidopsis lyrata miR4224
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caactga 7
|||||||
Sbjct: 1 caactga 7
>esi-miR3465-5p MIMAT0017791 Ectocarpus siliculosus miR3465-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caactga 7
|||||||
Sbjct: 1 caactga 7
>tgu-miR-217-3p MIMAT0027010 Taeniopygia guttata miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 7 aactgat 1
>dps-miR-2547-3p MIMAT0012355 Drosophila pseudoobscura
miR-2547-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aactgat 8
|||||||
Sbjct: 1 aactgat 7
>osa-miR2092-5p MIMAT0010048 Oryza sativa miR2092-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caactga 7
|||||||
Sbjct: 1 caactga 7
>oan-miR-217-3p MIMAT0007222 Ornithorhynchus anatinus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 8 aactgat 2
>oan-miR-1358 MIMAT0006990 Ornithorhynchus anatinus miR-1358
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aactgat 8
|||||||
Sbjct: 1 aactgat 7
>ath-miR837-5p MIMAT0004258 Arabidopsis thaliana miR837-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 7 aactgat 1
>sme-miR-7a-3p MIMAT0012096 Schmidtea mediterranea miR-7a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caactga 7
|||||||
Sbjct: 2 caactga 8
>rno-miR-217-3p MIMAT0017161 Rattus norvegicus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 7 aactgat 1
>mmu-miR-217-3p MIMAT0017072 Mus musculus miR-217-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aactgat 8
|||||||
Sbjct: 8 aactgat 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 175
Number of extensions: 158
Number of successful extensions: 135
Number of sequences better than 100.0: 17
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
