BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= sgiv-miR-8
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sly-miR477-3p MIMAT0035484 Solanum lycopersicum miR477-3p 14 27
ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p 14 27
mdo-miR-196a-3p MIMAT0028495 Monodelphis domestica miR-196a-3p 14 27
pde-miR951 MIMAT0025343 Pinus densata miR951 14 27
aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p 14 27
aca-miR-5414 MIMAT0022034 Anolis carolinensis miR-5414 14 27
aca-miR-196c-3p MIMAT0021833 Anolis carolinensis miR-196c-3p 14 27
gma-miR1520j MIMAT0018263 Glycine max miR1520j 14 27
tca-miR-3846-5p MIMAT0018740 Tribolium castaneum miR-3846-5p 14 27
pab-miR951 MIMAT0018161 Picea abies miR951 14 27
dvi-miR-11-5p MIMAT0032048 Drosophila virilis miR-11-5p 14 27
ptr-miR-548b MIMAT0008219 Pan troglodytes miR-548b 14 27
pta-miR951 MIMAT0005012 Pinus taeda miR951 14 27
hsa-miR-548b-3p MIMAT0003254 Homo sapiens miR-548b-3p 14 27
dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p 14 27
gga-miR-196-1-3p MIMAT0031017 Gallus gallus miR-196-1-3p 14 27
dme-miR-11-5p MIMAT0020793 Drosophila melanogaster miR-11-5p 14 27
>sly-miR477-3p MIMAT0035484 Solanum lycopersicum miR477-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagaac 7
|||||||
Sbjct: 8 caagaac 2
>ssa-miR-22b-5p MIMAT0032546 Salmo salar miR-22b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagaacg 8
|||||||
Sbjct: 7 aagaacg 1
>mdo-miR-196a-3p MIMAT0028495 Monodelphis domestica miR-196a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 1 caagaac 7
>pde-miR951 MIMAT0025343 Pinus densata miR951
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagaac 7
|||||||
Sbjct: 8 caagaac 2
>aca-miR-5464-5p MIMAT0022096 Anolis carolinensis miR-5464-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagaacg 8
|||||||
Sbjct: 8 aagaacg 2
>aca-miR-5414 MIMAT0022034 Anolis carolinensis miR-5414
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagaac 7
|||||||
Sbjct: 8 caagaac 2
>aca-miR-196c-3p MIMAT0021833 Anolis carolinensis miR-196c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 2 caagaac 8
>gma-miR1520j MIMAT0018263 Glycine max miR1520j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagaacg 8
|||||||
Sbjct: 1 aagaacg 7
>tca-miR-3846-5p MIMAT0018740 Tribolium castaneum miR-3846-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagaac 7
|||||||
Sbjct: 8 caagaac 2
>pab-miR951 MIMAT0018161 Picea abies miR951
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagaac 7
|||||||
Sbjct: 8 caagaac 2
>dvi-miR-11-5p MIMAT0032048 Drosophila virilis miR-11-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 1 caagaac 7
>ptr-miR-548b MIMAT0008219 Pan troglodytes miR-548b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 1 caagaac 7
>pta-miR951 MIMAT0005012 Pinus taeda miR951
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagaac 7
|||||||
Sbjct: 8 caagaac 2
>hsa-miR-548b-3p MIMAT0003254 Homo sapiens miR-548b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 1 caagaac 7
>dre-miR-22b-5p MIMAT0031943 Danio rerio miR-22b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagaacg 8
|||||||
Sbjct: 7 aagaacg 1
>gga-miR-196-1-3p MIMAT0031017 Gallus gallus miR-196-1-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 1 caagaac 7
>dme-miR-11-5p MIMAT0020793 Drosophila melanogaster miR-11-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagaac 7
|||||||
Sbjct: 1 caagaac 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 147
Number of extensions: 130
Number of successful extensions: 99
Number of sequences better than 100.0: 17
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
