BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-4-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gra-miR8732 MIMAT0034137 Gossypium raimondii miR8732 14 27
str-miR-8392-5p MIMAT0033452 Strongyloides ratti miR-8392-5p 14 27
ghr-miR7487 MIMAT0029129 Gossypium hirsutum miR7487 14 27
cel-miR-5594-5p MIMAT0022309 Caenorhabditis elegans miR-5594-5p 14 27
mtr-miR5555-5p MIMAT0022201 Medicago truncatula miR5555-5p 14 27
pma-miR-4586 MIMAT0019619 Petromyzon marinus miR-4586 14 27
dme-miR-2501-3p MIMAT0012217 Drosophila melanogaster miR-2501-3p 14 27
>gra-miR8732 MIMAT0034137 Gossypium raimondii miR8732
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagta 8
|||||||
Sbjct: 2 aagagta 8
>str-miR-8392-5p MIMAT0033452 Strongyloides ratti miR-8392-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagagt 7
|||||||
Sbjct: 8 caagagt 2
>ghr-miR7487 MIMAT0029129 Gossypium hirsutum miR7487
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aagagta 8
|||||||
Sbjct: 8 aagagta 2
>cel-miR-5594-5p MIMAT0022309 Caenorhabditis elegans miR-5594-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagta 8
|||||||
Sbjct: 1 aagagta 7
>mtr-miR5555-5p MIMAT0022201 Medicago truncatula miR5555-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aagagta 8
|||||||
Sbjct: 2 aagagta 8
>pma-miR-4586 MIMAT0019619 Petromyzon marinus miR-4586
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagagt 7
|||||||
Sbjct: 1 caagagt 7
>dme-miR-2501-3p MIMAT0012217 Drosophila melanogaster
miR-2501-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caagagt 7
|||||||
Sbjct: 7 caagagt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 101
Number of extensions: 94
Number of successful extensions: 68
Number of sequences better than 100.0: 7
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 7
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
