BLAST Search Results 
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mdv2-miR-m20
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ssa-miR-10b-3p MIMAT0032296 Salmo salar miR-10b-3p                     14      20
prd-miR-7872-3p MIMAT0030489 Panagrellus redivivus miR-7872-3p         14      20
hme-miR-6303-5p MIMAT0025008 Heliconius melpomene miR-6303-5p          14      20
gma-miR1516d MIMAT0024927 Glycine max miR1516d                         14      20
mdv2-miR-M20-3p MIMAT0004462 Mareks disease miR-M20-3p                 14      20
oha-miR-26-5p MIMAT0036861 Ophiophagus hannah miR-26-5p                12      80
tch-miR-26a-2-5p MIMAT0036602 Tupaia chinensis miR-26a-2-5p            12      80
tch-miR-26b-5p MIMAT0036550 Tupaia chinensis miR-26b-5p                12      80
tch-miR-26a-5p MIMAT0036488 Tupaia chinensis miR-26a-5p                12      80
chi-miR-26b-5p MIMAT0036103 Capra hircus miR-26b-5p                    12      80
chi-miR-26a-5p MIMAT0036101 Capra hircus miR-26a-5p                    12      80
dvi-miR-252-5p MIMAT0035564 Drosophila virilis miR-252-5p              12      80
efu-miR-9365 MIMAT0035182 Eptesicus fuscus miR-9365                    12      80
efu-miR-26b MIMAT0035076 Eptesicus fuscus miR-26b                      12      80
efu-miR-26c MIMAT0035006 Eptesicus fuscus miR-26c                      12      80
efu-miR-26a MIMAT0034939 Eptesicus fuscus miR-26a                      12      80
cfa-miR-508a MIMAT0034419 Canis familiaris miR-508a                    12      80
cfa-miR-8869 MIMAT0034366 Canis familiaris miR-8869                    12      80
pxy-miR-2767 MIMAT0033818 Plutella xylostella miR-2767                 12      80
pxy-miR-252 MIMAT0033713 Plutella xylostella miR-252                   12      80
ppc-miR-8336-5p MIMAT0033218 Pristionchus pacificus miR-8336-5p        12      80
ppc-miR-8245b-3p MIMAT0033187 Pristionchus pacificus miR-8245b-3p      12      80
ssa-miR-26d-5p MIMAT0032571 Salmo salar miR-26d-5p                     12      80
ssa-miR-26b-5p MIMAT0032569 Salmo salar miR-26b-5p                     12      80
ssa-miR-26a-5p MIMAT0032563 Salmo salar miR-26a-5p                     12      80
bbe-miR-252a-5p MIMAT0031655 Branchiostoma belcheri miR-252a-5p        12      80
bbe-miR-1-3p MIMAT0031591 Branchiostoma belcheri miR-1-3p              12      80
hsa-miR-8054 MIMAT0030981 Homo sapiens miR-8054                        12      80
prd-miR-7870-5p MIMAT0030484 Panagrellus redivivus miR-7870-5p         12      80
hhi-miR-26 MIMAT0030361 Hippoglossus hippoglossus miR-26               12      80
bdi-miR5049-3p MIMAT0030163 Brachypodium distachyon miR5049-3p         12      80
oar-miR-26b MIMAT0030052 Ovis aries miR-26b                            12      80
oar-miR-26a MIMAT0030051 Ovis aries miR-26a                            12      80
lva-miR-252a-5p MIMAT0032217 Lytechinus variegatus miR-252a-5p         12      80
pmi-miR-252a-5p MIMAT0032170 Patiria miniata miR-252a-5p               12      80
crm-miR-7600 MIMAT0029617 Caenorhabditis remanei miR-7600              12      80
ipu-miR-26b MIMAT0029486 Ictalurus punctatus miR-26b                   12      80
ipu-miR-26a MIMAT0029485 Ictalurus punctatus miR-26a                   12      80
ccr-miR-26a MIMAT0026281 Cyprinus carpio miR-26a                       12      80
hme-miR-3338 MIMAT0024982 Heliconius melpomene miR-3338                12      80
hme-miR-252 MIMAT0024948 Heliconius melpomene miR-252                  12      80
mse-miR-2767 MIMAT0024488 Manduca sexta miR-2767                       12      80
mse-miR-252 MIMAT0024465 Manduca sexta miR-252                         12      80
mse-miR-3338 MIMAT0024432 Manduca sexta miR-3338                       12      80
ppy-miR-548c MIMAT0024379 Pongo pygmaeus miR-548c                      12      80
ggo-miR-548c MIMAT0024266 Gorilla gorilla miR-548c                     12      80
ggo-miR-26b MIMAT0024091 Gorilla gorilla miR-26b                       12      80
cgr-miR-412-3p MIMAT0023955 Cricetulus griseus miR-412-3p              12      80
cgr-miR-26b-5p MIMAT0023872 Cricetulus griseus miR-26b-5p              12      80
cgr-miR-26a MIMAT0023871 Cricetulus griseus miR-26a                    12      80
hco-miR-5928e MIMAT0023481 Haemonchus contortus miR-5928e              12      80
gma-miR5559 MIMAT0023168 Glycine max miR5559                           12      80
ola-miR-26 MIMAT0022575 Oryzias latipes miR-26                         12      80
tur-miR-12a-3p MIMAT0023103 Tetranychus urticae miR-12a-3p             12      80
tur-miR-252-5p MIMAT0023076 Tetranychus urticae miR-252-5p             12      80
hsa-miR-548av-5p MIMAT0022303 Homo sapiens miR-548av-5p                12      80
hsa-miR-5585-5p MIMAT0022285 Homo sapiens miR-5585-5p                  12      80
mtr-miR5559-5p MIMAT0022221 Medicago truncatula miR5559-5p             12      80
mtr-miR5557-5p MIMAT0022215 Medicago truncatula miR5557-5p             12      80
aca-miR-26-5p MIMAT0021902 Anolis carolinensis miR-26-5p               12      80
aca-miR-1662-3p MIMAT0021795 Anolis carolinensis miR-1662-3p           12      80
dme-miR-4975-5p MIMAT0020205 Drosophila melanogaster miR-4975-5p       12      80
sko-miR-4829c MIMAT0020040 Saccoglossus kowalevskii miR-4829c          12      80
pma-miR-26b-5p MIMAT0019411 Petromyzon marinus miR-26b-5p              12      80
pma-miR-26a-5p MIMAT0019408 Petromyzon marinus miR-26a-5p              12      80
hsa-miR-4465 MIMAT0018992 Homo sapiens miR-4465                        12      80
ngi-miR-252 MIMAT0018410 Nasonia giraulti miR-252                      12      80
tca-miR-252a-5p MIMAT0018804 Tribolium castaneum miR-252a-5p           12      80
ppy-miR-890 MIMAT0016125 Pongo pygmaeus miR-890                        12      80
ppy-miR-26b MIMAT0015733 Pongo pygmaeus miR-26b                        12      80
nvi-miR-252 MIMAT0015701 Nasonia vitripennis miR-252                   12      80
bmo-miR-3370 MIMAT0015557 Bombyx mori miR-3370                         12      80
bmo-miR-3338-3p MIMAT0015526 Bombyx mori miR-3338-3p                   12      80
bmo-miR-3315 MIMAT0015503 Bombyx mori miR-3315                         12      80
api-miR-252a MIMAT0014719 Acyrthosiphon pisum miR-252a                 12      80
tgu-miR-26-5p MIMAT0014516 Taeniopygia guttata miR-26-5p               12      80
cqu-miR-252-5p MIMAT0014373 Culex quinquefasciatus miR-252-5p          12      80
aae-miR-12-3p MIMAT0014254 Aedes aegypti miR-12-3p                     12      80
eca-miR-26a MIMAT0012975 Equus caballus miR-26a                        12      80
mdo-miR-26-5p MIMAT0012736 Monodelphis domestica miR-26-5p             12      80
bmo-miR-2767 MIMAT0013643 Bombyx mori miR-2767                         12      80
dpu-miR-252a MIMAT0012647 Daphnia pulex miR-252a                       12      80
dsi-miR-252-5p MIMAT0012465 Drosophila simulans miR-252-5p             12      80
dps-miR-252-5p MIMAT0012261 Drosophila pseudoobscura miR-252-5p        12      80
bta-miR-2385-3p MIMAT0011936 Bos taurus miR-2385-3p                    12      80
bmo-miR-252-5p MIMAT0010124 Bombyx mori miR-252-5p                     12      80
ame-miR-252a MIMAT0010113 Apis mellifera miR-252a                      12      80
spu-miR-252a MIMAT0009672 Strongylocentrotus purpuratus miR-252a       12      80
sko-miR-252a MIMAT0009638 Saccoglossus kowalevskii miR-252a            12      80
sko-miR-1-5p MIMAT0019152 Saccoglossus kowalevskii miR-1-5p            12      80
lgi-miR-252a MIMAT0009591 Lottia gigantea miR-252a                     12      80
cte-miR-252a MIMAT0009536 Capitella teleta miR-252a                    12      80
bfl-miR-252a MIMAT0009498 Branchiostoma floridae miR-252a              12      80
bfl-miR-1-5p MIMAT0019137 Branchiostoma floridae miR-1-5p              12      80
dvi-miR-12-3p MIMAT0032045 Drosophila virilis miR-12-3p                12      80
ptr-miR-890 MIMAT0008332 Pan troglodytes miR-890                       12      80
ptr-miR-548k MIMAT0008225 Pan troglodytes miR-548k                     12      80
ptr-miR-26b MIMAT0008077 Pan troglodytes miR-26b                       12      80
ptr-miR-1297 MIMAT0008016 Pan troglodytes miR-1297                     12      80
cfa-miR-26b MIMAT0006678 Canis familiaris miR-26b                      12      80
cfa-miR-26a MIMAT0006595 Canis familiaris miR-26a                      12      80
mml-miR-890-5p MIMAT0006529 Macaca mulatta miR-890-5p                  12      80
mml-miR-26b-5p MIMAT0006166 Macaca mulatta miR-26b-5p                  12      80
gma-miR390b-3p MIMAT0020935 Glycine max miR390b-3p                     12      80
oan-miR-26-5p MIMAT0006991 Ornithorhynchus anatinus miR-26-5p          12      80
hsa-miR-1297 MIMAT0005886 Homo sapiens miR-1297                        12      80
hsa-miR-548k MIMAT0005882 Homo sapiens miR-548k                        12      80
dme-miR-252-5p MIMAT0005516 Drosophila melanogaster miR-252-5p         12      80
hsa-miR-890 MIMAT0004912 Homo sapiens miR-890                          12      80
xtr-miR-26 MIMAT0003569 Xenopus tropicalis miR-26                      12      80
bta-miR-26b MIMAT0003531 Bos taurus miR-26b                            12      80
bta-miR-26a MIMAT0003516 Bos taurus miR-26a                            12      80
tni-miR-26 MIMAT0003038 Tetraodon nigroviridis miR-26                  12      80
fru-miR-26 MIMAT0003037 Fugu rubripes miR-26                           12      80
ppa-miR-26a MIMAT0002350 Pan paniscus miR-26a                          12      80
mml-miR-26a-5p MIMAT0002349 Macaca mulatta miR-26a-5p                  12      80
mne-miR-26a MIMAT0002348 Macaca nemestrina miR-26a                     12      80
lla-miR-26a MIMAT0002347 Lagothrix lagotricha miR-26a                  12      80
ppy-miR-26a MIMAT0002346 Pongo pygmaeus miR-26a                        12      80
ggo-miR-26a MIMAT0002345 Gorilla gorilla miR-26a                       12      80
ptr-miR-26a MIMAT0002344 Pan troglodytes miR-26a                       12      80
ssc-miR-26a MIMAT0002135 Sus scrofa miR-26a                            12      80
dre-miR-26b MIMAT0001795 Danio rerio miR-26b                           12      80
dre-miR-26a-5p MIMAT0001794 Danio rerio miR-26a-5p                     12      80
gga-miR-26a-5p MIMAT0001118 Gallus gallus miR-26a-5p                   12      80
rno-miR-26b-5p MIMAT0000797 Rattus norvegicus miR-26b-5p               12      80
rno-miR-26a-5p MIMAT0000796 Rattus norvegicus miR-26a-5p               12      80
mmu-miR-26b-5p MIMAT0000534 Mus musculus miR-26b-5p                    12      80
mmu-miR-26a-5p MIMAT0000533 Mus musculus miR-26a-5p                    12      80
dme-miR-12-3p MIMAT0020794 Drosophila melanogaster miR-12-3p           12      80
hsa-miR-26b-5p MIMAT0000083 Homo sapiens miR-26b-5p                    12      80
hsa-miR-26a-5p MIMAT0000082 Homo sapiens miR-26a-5p                    12      80



>ssa-miR-10b-3p MIMAT0032296 Salmo salar miR-10b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caagtac 7
         |||||||
Sbjct: 1 caagtac 7





>prd-miR-7872-3p MIMAT0030489 Panagrellus redivivus miR-7872-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caagtac 7
         |||||||
Sbjct: 1 caagtac 7





>hme-miR-6303-5p MIMAT0025008 Heliconius melpomene miR-6303-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caagtac 7
         |||||||
Sbjct: 2 caagtac 8





>gma-miR1516d MIMAT0024927 Glycine max miR1516d
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 caagtac 7
         |||||||
Sbjct: 7 caagtac 1





>mdv2-miR-M20-3p MIMAT0004462 Mareks disease miR-M20-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 caagtac 7
         |||||||
Sbjct: 2 caagtac 8





>oha-miR-26-5p MIMAT0036861 Ophiophagus hannah miR-26-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>tch-miR-26a-2-5p MIMAT0036602 Tupaia chinensis miR-26a-2-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>tch-miR-26b-5p MIMAT0036550 Tupaia chinensis miR-26b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>tch-miR-26a-5p MIMAT0036488 Tupaia chinensis miR-26a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>chi-miR-26b-5p MIMAT0036103 Capra hircus miR-26b-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>chi-miR-26a-5p MIMAT0036101 Capra hircus miR-26a-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>dvi-miR-252-5p MIMAT0035564 Drosophila virilis miR-252-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 aagtac 7
         ||||||
Sbjct: 3 aagtac 8





>efu-miR-9365 MIMAT0035182 Eptesicus fuscus miR-9365
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 caagta 6
         ||||||
Sbjct: 8 caagta 3





>efu-miR-26b MIMAT0035076 Eptesicus fuscus miR-26b
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>efu-miR-26c MIMAT0035006 Eptesicus fuscus miR-26c
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>efu-miR-26a MIMAT0034939 Eptesicus fuscus miR-26a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 caagta 6
         ||||||
Sbjct: 3 caagta 8





>cfa-miR-508a MIMAT0034419 Canis familiaris miR-508a
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 caagta 6
         ||||||
Sbjct: 6 caagta 1





>cfa-miR-8869