BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ebv-miR-bart18-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-544 MIMAT0034878 Eptesicus fuscus miR-544 14 20
ssa-miR-152-5p MIMAT0032385 Salmo salar miR-152-5p 14 20
prd-miR-7918a-3p MIMAT0030607 Panagrellus redivivus miR-7918a-3p 14 20
mtr-miR7696b-5p MIMAT0029988 Medicago truncatula miR7696b-5p 14 20
mtr-miR7696a-5p MIMAT0029986 Medicago truncatula miR7696a-5p 14 20
mmu-miR-873b MIMAT0025177 Mus musculus miR-873b 14 20
bta-miR-2957 MIMAT0016933 Bos taurus miR-2957 14 20
tca-miR-100-3p MIMAT0019113 Tribolium castaneum miR-100-3p 14 20
ebv-miR-BART18-5p MIMAT0003717 Epstein Barr miR-BART18-5p 14 20
ata-miR169d-3p MIMAT0037207 Aegilops tauschii miR169d-3p 12 80
chi-miR-2284e MIMAT0036096 Capra hircus miR-2284e 12 80
dvi-miR-969-3p MIMAT0035589 Drosophila virilis miR-969-3p 12 80
nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p 12 80
efu-miR-9243c MIMAT0034874 Eptesicus fuscus miR-9243c 12 80
eca-miR-8998 MIMAT0034538 Equus caballus miR-8998 12 80
gra-miR8769 MIMAT0034207 Gossypium raimondii miR8769 12 80
sma-miR-8415-3p MIMAT0033535 Schistosoma mansoni miR-8415-3p 12 80
ssa-miR-148b-5p MIMAT0032381 Salmo salar miR-148b-5p 12 80
ssa-miR-148a-5p MIMAT0032379 Salmo salar miR-148a-5p 12 80
prd-miR-7918c-3p MIMAT0030783 Panagrellus redivivus miR-7918c-3p 12 80
prd-miR-7918d-3p MIMAT0030781 Panagrellus redivivus miR-7918d-3p 12 80
prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p 12 80
prd-miR-7918e-3p MIMAT0030675 Panagrellus redivivus miR-7918e-3p 12 80
prd-miR-7918b-3p MIMAT0030609 Panagrellus redivivus miR-7918b-3p 12 80
mtr-miR169l-3p MIMAT0030002 Medicago truncatula miR169l-3p 12 80
mtr-miR7696d-5p MIMAT0029992 Medicago truncatula miR7696d-5p 12 80
mtr-miR7696c-5p MIMAT0029990 Medicago truncatula miR7696c-5p 12 80
lja-miR7534 MIMAT0029359 Lotus japonicus miR7534 12 80
mmu-miR-7217-5p MIMAT0028402 Mus musculus miR-7217-5p 12 80
sbi-miR6233-3p MIMAT0026449 Sorghum bicolor miR6233-3p 12 80
mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p 12 80
mmu-miR-6414 MIMAT0025168 Mus musculus miR-6414 12 80
ppe-miR6265 MIMAT0027284 Prunus persica miR6265 12 80
nta-miR6158c MIMAT0024768 Nicotiana tabacum miR6158c 12 80
nta-miR6158b MIMAT0024767 Nicotiana tabacum miR6158b 12 80
nta-miR6158a MIMAT0024766 Nicotiana tabacum miR6158a 12 80
bta-miR-2284y MIMAT0024579 Bos taurus miR-2284y 12 80
gma-miR5776 MIMAT0023181 Glycine max miR5776 12 80
mmu-miR-5616-3p MIMAT0022360 Mus musculus miR-5616-3p 12 80
cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p 12 80
gma-miR4365 MIMAT0018264 Glycine max miR4365 12 80
cin-miR-4010-3p MIMAT0016507 Ciona intestinalis miR-4010-3p 12 80
cin-miR-1502d-5p MIMAT0016493 Ciona intestinalis miR-1502d-5p 12 80
cin-miR-1502c-5p MIMAT0016491 Ciona intestinalis miR-1502c-5p 12 80
cin-miR-1502b-5p MIMAT0016489 Ciona intestinalis miR-1502b-5p 12 80
cin-miR-1502a-5p MIMAT0016487 Ciona intestinalis miR-1502a-5p 12 80
cin-miR-4001h-5p MIMAT0016459 Ciona intestinalis miR-4001h-5p 12 80
cin-miR-4001b-5p MIMAT0016446 Ciona intestinalis miR-4001b-5p 12 80
cin-miR-4001g-3p MIMAT0016458 Ciona intestinalis miR-4001g-3p 12 80
cin-miR-4001f-5p MIMAT0016456 Ciona intestinalis miR-4001f-5p 12 80
cin-miR-4001e-5p MIMAT0016454 Ciona intestinalis miR-4001e-5p 12 80
cin-miR-4001d-5p MIMAT0016452 Ciona intestinalis miR-4001d-5p 12 80
cin-miR-4001c-5p MIMAT0016450 Ciona intestinalis miR-4001c-5p 12 80
cin-miR-4001i-5p MIMAT0016966 Ciona intestinalis miR-4001i-5p 12 80
cin-miR-4001a-5p MIMAT0016444 Ciona intestinalis miR-4001a-5p 12 80
rno-miR-449c-3p MIMAT0017804 Rattus norvegicus miR-449c-3p 12 80
aly-miR169b-3p MIMAT0017488 Arabidopsis lyrata miR169b-3p 12 80
aly-miR169a-3p MIMAT0017486 Arabidopsis lyrata miR169a-3p 12 80
rlcv-miR-rL1-24-5p MIMAT0016947 Rhesus lymphocryptovirus miR-rL1... 12 80
osa-miR2921 MIMAT0014052 Oryza sativa miR2921 12 80
zma-miR169r-3p MIMAT0015329 Zea mays miR169r-3p 12 80
bmo-miR-2795 MIMAT0013695 Bombyx mori miR-2795 12 80
cte-miR-216c MIMAT0013570 Capitella teleta miR-216c 12 80
dsi-miR-969-3p MIMAT0012480 Drosophila simulans miR-969-3p 12 80
dps-miR-969-3p MIMAT0012276 Drosophila pseudoobscura miR-969-3p 12 80
bdi-miR437 MIMAT0012188 Brachypodium distachyon miR437 12 80
bta-miR-2284e MIMAT0012080 Bos taurus miR-2284e 12 80
bta-miR-2284b MIMAT0011983 Bos taurus miR-2284b 12 80
bta-miR-2284a MIMAT0011906 Bos taurus miR-2284a 12 80
bta-miR-2363 MIMAT0011901 Bos taurus miR-2363 12 80
bta-miR-2284u MIMAT0011895 Bos taurus miR-2284u 12 80
bta-miR-2284g MIMAT0011847 Bos taurus miR-2284g 12 80
dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p 12 80
gma-miR1516a-5p MIMAT0020937 Glycine max miR1516a-5p 12 80
odi-miR-1502 MIMAT0006062 Oikopleura dioica miR-1502 12 80
odi-miR-1482 MIMAT0006034 Oikopleura dioica miR-1482 12 80
dme-miR-969-3p MIMAT0020866 Drosophila melanogaster miR-969-3p 12 80
zma-miR169b-3p MIMAT0015141 Zea mays miR169b-3p 12 80
zma-miR169a-3p MIMAT0015140 Zea mays miR169a-3p 12 80
ath-miR169b-3p MIMAT0031897 Arabidopsis thaliana miR169b-3p 12 80
hsa-miR-148b-5p MIMAT0004699 Homo sapiens miR-148b-5p 12 80
dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p 12 80
ath-miR169a-3p MIMAT0031886 Arabidopsis thaliana miR169a-3p 12 80
>efu-miR-544 MIMAT0034878 Eptesicus fuscus miR-544
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>ssa-miR-152-5p MIMAT0032385 Salmo salar miR-152-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 1 caagttc 7
>prd-miR-7918a-3p MIMAT0030607 Panagrellus redivivus
miR-7918a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>mtr-miR7696b-5p MIMAT0029988 Medicago truncatula miR7696b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>mtr-miR7696a-5p MIMAT0029986 Medicago truncatula miR7696a-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>mmu-miR-873b MIMAT0025177 Mus musculus miR-873b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>bta-miR-2957 MIMAT0016933 Bos taurus miR-2957
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>tca-miR-100-3p MIMAT0019113 Tribolium castaneum miR-100-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 1 caagttc 7
>ebv-miR-BART18-5p MIMAT0003717 Epstein Barr miR-BART18-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caagttc 7
|||||||
Sbjct: 2 caagttc 8
>ata-miR169d-3p MIMAT0037207 Aegilops tauschii miR169d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>chi-miR-2284e MIMAT0036096 Capra hircus miR-2284e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 8 caagtt 3
>dvi-miR-969-3p MIMAT0035589 Drosophila virilis miR-969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>nve-miR-9414-5p MIMAT0035369 Nematostella vectensis miR-9414-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>efu-miR-9243c MIMAT0034874 Eptesicus fuscus miR-9243c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 6 aagttc 1
>eca-miR-8998 MIMAT0034538 Equus caballus miR-8998
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>gra-miR8769 MIMAT0034207 Gossypium raimondii miR8769
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>sma-miR-8415-3p MIMAT0033535 Schistosoma mansoni miR-8415-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>ssa-miR-148b-5p MIMAT0032381 Salmo salar miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>ssa-miR-148a-5p MIMAT0032379 Salmo salar miR-148a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>prd-miR-7918c-3p MIMAT0030783 Panagrellus redivivus
miR-7918c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>prd-miR-7918d-3p MIMAT0030781 Panagrellus redivivus
miR-7918d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>prd-miR-7947-5p MIMAT0030758 Panagrellus redivivus miR-7947-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>prd-miR-7918e-3p MIMAT0030675 Panagrellus redivivus
miR-7918e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>prd-miR-7918b-3p MIMAT0030609 Panagrellus redivivus
miR-7918b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>mtr-miR169l-3p MIMAT0030002 Medicago truncatula miR169l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>mtr-miR7696d-5p MIMAT0029992 Medicago truncatula miR7696d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>mtr-miR7696c-5p MIMAT0029990 Medicago truncatula miR7696c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>lja-miR7534 MIMAT0029359 Lotus japonicus miR7534
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 8 caagtt 3
>mmu-miR-7217-5p MIMAT0028402 Mus musculus miR-7217-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>sbi-miR6233-3p MIMAT0026449 Sorghum bicolor miR6233-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 1 caagtt 6
>mmu-miR-6970-5p MIMAT0027842 Mus musculus miR-6970-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>mmu-miR-6414 MIMAT0025168 Mus musculus miR-6414
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>ppe-miR6265 MIMAT0027284 Prunus persica miR6265
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>nta-miR6158c MIMAT0024768 Nicotiana tabacum miR6158c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>nta-miR6158b MIMAT0024767 Nicotiana tabacum miR6158b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>nta-miR6158a MIMAT0024766 Nicotiana tabacum miR6158a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>bta-miR-2284y MIMAT0024579 Bos taurus miR-2284y
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>gma-miR5776 MIMAT0023181 Glycine max miR5776
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>mmu-miR-5616-3p MIMAT0022360 Mus musculus miR-5616-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>cel-miR-4809-5p MIMAT0019993 Caenorhabditis elegans miR-4809-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>gma-miR4365 MIMAT0018264 Glycine max miR4365
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4010-3p MIMAT0016507 Ciona intestinalis miR-4010-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 1 caagtt 6
>cin-miR-1502d-5p MIMAT0016493 Ciona intestinalis miR-1502d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 7 aagttc 2
>cin-miR-1502c-5p MIMAT0016491 Ciona intestinalis miR-1502c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 7 aagttc 2
>cin-miR-1502b-5p MIMAT0016489 Ciona intestinalis miR-1502b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 7 aagttc 2
>cin-miR-1502a-5p MIMAT0016487 Ciona intestinalis miR-1502a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001h-5p MIMAT0016459 Ciona intestinalis miR-4001h-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001b-5p MIMAT0016446 Ciona intestinalis miR-4001b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001g-3p MIMAT0016458 Ciona intestinalis miR-4001g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001f-5p MIMAT0016456 Ciona intestinalis miR-4001f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001e-5p MIMAT0016454 Ciona intestinalis miR-4001e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001d-5p MIMAT0016452 Ciona intestinalis miR-4001d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001c-5p MIMAT0016450 Ciona intestinalis miR-4001c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001i-5p MIMAT0016966 Ciona intestinalis miR-4001i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>cin-miR-4001a-5p MIMAT0016444 Ciona intestinalis miR-4001a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>rno-miR-449c-3p MIMAT0017804 Rattus norvegicus miR-449c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>aly-miR169b-3p MIMAT0017488 Arabidopsis lyrata miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>aly-miR169a-3p MIMAT0017486 Arabidopsis lyrata miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>rlcv-miR-rL1-24-5p MIMAT0016947 Rhesus lymphocryptovirus
miR-rL1-24-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>osa-miR2921 MIMAT0014052 Oryza sativa miR2921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>zma-miR169r-3p MIMAT0015329 Zea mays miR169r-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>bmo-miR-2795 MIMAT0013695 Bombyx mori miR-2795
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 1 caagtt 6
>cte-miR-216c MIMAT0013570 Capitella teleta miR-216c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 1 caagtt 6
>dsi-miR-969-3p MIMAT0012480 Drosophila simulans miR-969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>dps-miR-969-3p MIMAT0012276 Drosophila pseudoobscura miR-969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>bdi-miR437 MIMAT0012188 Brachypodium distachyon miR437
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 6 aagttc 1
>bta-miR-2284e MIMAT0012080 Bos taurus miR-2284e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>bta-miR-2284b MIMAT0011983 Bos taurus miR-2284b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>bta-miR-2284a MIMAT0011906 Bos taurus miR-2284a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>bta-miR-2363 MIMAT0011901 Bos taurus miR-2363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 8 caagtt 3
>bta-miR-2284u MIMAT0011895 Bos taurus miR-2284u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>bta-miR-2284g MIMAT0011847 Bos taurus miR-2284g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 3 aagttc 8
>dvi-miR-314-5p MIMAT0032041 Drosophila virilis miR-314-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 8 caagtt 3
>gma-miR1516a-5p MIMAT0020937 Glycine max miR1516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 1 caagtt 6
>odi-miR-1502 MIMAT0006062 Oikopleura dioica miR-1502
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 7 aagttc 2
>odi-miR-1482 MIMAT0006034 Oikopleura dioica miR-1482
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 aagttc 7
||||||
Sbjct: 8 aagttc 3
>dme-miR-969-3p MIMAT0020866 Drosophila melanogaster miR-969-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 6 caagtt 1
>zma-miR169b-3p MIMAT0015141 Zea mays miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>zma-miR169a-3p MIMAT0015140 Zea mays miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>ath-miR169b-3p MIMAT0031897 Arabidopsis thaliana miR169b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
>hsa-miR-148b-5p MIMAT0004699 Homo sapiens miR-148b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 aagttc 7
||||||
Sbjct: 1 aagttc 6
>dme-miR-314-5p MIMAT0020840 Drosophila melanogaster miR-314-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 caagtt 6
||||||
Sbjct: 8 caagtt 3
>ath-miR169a-3p MIMAT0031886 Arabidopsis thaliana miR169a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 caagtt 6
||||||
Sbjct: 3 caagtt 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 137
Number of extensions: 128
Number of successful extensions: 83
Number of sequences better than 100.0: 83
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 83
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
