BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-3rc-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B3RC-5p MIMAT0031764 Herpes B miR-B3RC-5p 16 6.9
pxy-miR-8539-3p MIMAT0033797 Plutella xylostella miR-8539-3p 14 27
mdo-miR-7386j-3p MIMAT0028847 Monodelphis domestica miR-7386j-3p 14 27
cgr-miR-325-3p MIMAT0023912 Cricetulus griseus miR-325-3p 14 27
osa-miR2931 MIMAT0014062 Oryza sativa miR2931 14 27
mtr-miR2677 MIMAT0013505 Medicago truncatula miR2677 14 27
dvi-miR-7-3p MIMAT0032058 Drosophila virilis miR-7-3p 14 27
mml-miR-95-5p MIMAT0026811 Macaca mulatta miR-95-5p 14 27
gma-miR1522 MIMAT0007383 Glycine max miR1522 14 27
mmu-miR-325-3p MIMAT0004640 Mus musculus miR-325-3p 14 27
rno-miR-325-3p MIMAT0004639 Rattus norvegicus miR-325-3p 14 27
dme-miR-7-3p MIMAT0020790 Drosophila melanogaster miR-7-3p 14 27
hsa-miR-95-5p MIMAT0026473 Homo sapiens miR-95-5p 14 27
>hbv-miR-B3RC-5p MIMAT0031764 Herpes B miR-B3RC-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 caataaac 8
||||||||
Sbjct: 1 caataaac 8
>pxy-miR-8539-3p MIMAT0033797 Plutella xylostella miR-8539-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aataaac 8
|||||||
Sbjct: 8 aataaac 2
>mdo-miR-7386j-3p MIMAT0028847 Monodelphis domestica
miR-7386j-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aataaac 8
|||||||
Sbjct: 1 aataaac 7
>cgr-miR-325-3p MIMAT0023912 Cricetulus griseus miR-325-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caataaa 7
|||||||
Sbjct: 7 caataaa 1
>osa-miR2931 MIMAT0014062 Oryza sativa miR2931
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caataaa 7
|||||||
Sbjct: 8 caataaa 2
>mtr-miR2677 MIMAT0013505 Medicago truncatula miR2677
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caataaa 7
|||||||
Sbjct: 7 caataaa 1
>dvi-miR-7-3p MIMAT0032058 Drosophila virilis miR-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caataaa 7
|||||||
Sbjct: 1 caataaa 7
>mml-miR-95-5p MIMAT0026811 Macaca mulatta miR-95-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caataaa 7
|||||||
Sbjct: 2 caataaa 8
>gma-miR1522 MIMAT0007383 Glycine max miR1522
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caataaa 7
|||||||
Sbjct: 7 caataaa 1
>mmu-miR-325-3p MIMAT0004640 Mus musculus miR-325-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caataaa 7
|||||||
Sbjct: 7 caataaa 1
>rno-miR-325-3p MIMAT0004639 Rattus norvegicus miR-325-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caataaa 7
|||||||
Sbjct: 7 caataaa 1
>dme-miR-7-3p MIMAT0020790 Drosophila melanogaster miR-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caataaa 7
|||||||
Sbjct: 1 caataaa 7
>hsa-miR-95-5p MIMAT0026473 Homo sapiens miR-95-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caataaa 7
|||||||
Sbjct: 2 caataaa 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 110
Number of extensions: 96
Number of successful extensions: 88
Number of sequences better than 100.0: 13
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)