BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-25
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mtr-miR5288 MIMAT0021349 Medicago truncatula miR5288 16 6.9
cin-miR-4059-3p MIMAT0016607 Ciona intestinalis miR-4059-3p 16 6.9
gra-miR172b MIMAT0034141 Gossypium raimondii miR172b 14 27
mdo-miR-7369-5p MIMAT0028760 Monodelphis domestica miR-7369-5p 14 27
hsa-miR-7157-5p MIMAT0028224 Homo sapiens miR-7157-5p 14 27
aca-miR-5422 MIMAT0022042 Anolis carolinensis miR-5422 14 27
sly-miR5304 MIMAT0020768 Solanum lycopersicum miR5304 14 27
mtr-miR2600e MIMAT0021331 Medicago truncatula miR2600e 14 27
mtr-miR2600d MIMAT0021330 Medicago truncatula miR2600d 14 27
mtr-miR2600c MIMAT0021329 Medicago truncatula miR2600c 14 27
mtr-miR2600b MIMAT0021328 Medicago truncatula miR2600b 14 27
pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567 14 27
tca-miR-3849-3p MIMAT0018753 Tribolium castaneum miR-3849-3p 14 27
hsa-miR-4310 MIMAT0016862 Homo sapiens miR-4310 14 27
cin-miR-4062-3p MIMAT0016613 Ciona intestinalis miR-4062-3p 14 27
mmu-miR-1955-3p MIMAT0017348 Mus musculus miR-1955-3p 14 27
ppt-miR1031b MIMAT0005134 Physcomitrella patens miR1031b 14 27
ppt-miR1031a MIMAT0005133 Physcomitrella patens miR1031a 14 27
>mtr-miR5288 MIMAT0021349 Medicago truncatula miR5288
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 caatgctg 8
||||||||
Sbjct: 8 caatgctg 1
>cin-miR-4059-3p MIMAT0016607 Ciona intestinalis miR-4059-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 caatgctg 8
||||||||
Sbjct: 1 caatgctg 8
>gra-miR172b MIMAT0034141 Gossypium raimondii miR172b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgctg 8
|||||||
Sbjct: 8 aatgctg 2
>mdo-miR-7369-5p MIMAT0028760 Monodelphis domestica miR-7369-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caatgct 7
|||||||
Sbjct: 1 caatgct 7
>hsa-miR-7157-5p MIMAT0028224 Homo sapiens miR-7157-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgctg 8
|||||||
Sbjct: 8 aatgctg 2
>aca-miR-5422 MIMAT0022042 Anolis carolinensis miR-5422
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgctg 8
|||||||
Sbjct: 8 aatgctg 2
>sly-miR5304 MIMAT0020768 Solanum lycopersicum miR5304
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caatgct 7
|||||||
Sbjct: 2 caatgct 8
>mtr-miR2600e MIMAT0021331 Medicago truncatula miR2600e
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caatgct 7
|||||||
Sbjct: 8 caatgct 2
>mtr-miR2600d MIMAT0021330 Medicago truncatula miR2600d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caatgct 7
|||||||
Sbjct: 8 caatgct 2
>mtr-miR2600c MIMAT0021329 Medicago truncatula miR2600c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caatgct 7
|||||||
Sbjct: 8 caatgct 2
>mtr-miR2600b MIMAT0021328 Medicago truncatula miR2600b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caatgct 7
|||||||
Sbjct: 8 caatgct 2
>pma-miR-4567 MIMAT0019599 Petromyzon marinus miR-4567
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgctg 8
|||||||
Sbjct: 2 aatgctg 8
>tca-miR-3849-3p MIMAT0018753 Tribolium castaneum miR-3849-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caatgct 7
|||||||
Sbjct: 7 caatgct 1
>hsa-miR-4310 MIMAT0016862 Homo sapiens miR-4310
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 aatgctg 8
|||||||
Sbjct: 8 aatgctg 2
>cin-miR-4062-3p MIMAT0016613 Ciona intestinalis miR-4062-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 aatgctg 8
|||||||
Sbjct: 1 aatgctg 7
>mmu-miR-1955-3p MIMAT0017348 Mus musculus miR-1955-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 caatgct 7
|||||||
Sbjct: 8 caatgct 2
>ppt-miR1031b MIMAT0005134 Physcomitrella patens miR1031b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caatgct 7
|||||||
Sbjct: 2 caatgct 8
>ppt-miR1031a MIMAT0005133 Physcomitrella patens miR1031a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 caatgct 7
|||||||
Sbjct: 2 caatgct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 367
Number of extensions: 347
Number of successful extensions: 281
Number of sequences better than 100.0: 18
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 18
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
