BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-3-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-696 MIMAT0003483 Mus musculus miR-696 14 20
pxy-miR-8492 MIMAT0033700 Plutella xylostella miR-8492 12 80
blv-miR-B2-3p MIMAT0025861 Bovine leukemia miR-B2-3p 12 80
prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3 12 80
hvu-miR6206 MIMAT0024834 Hordeum vulgare miR6206 12 80
mtr-miR5213-5p MIMAT0021146 Medicago truncatula miR5213-5p 12 80
bmo-miR-3406-3p MIMAT0015612 Bombyx mori miR-3406-3p 12 80
mtr-miR2631 MIMAT0013395 Medicago truncatula miR2631 12 80
dme-miR-2496-5p MIMAT0012206 Drosophila melanogaster miR-2496-5p 12 80
bta-miR-2408 MIMAT0011966 Bos taurus miR-2408 12 80
mmu-miR-466f-5p MIMAT0004881 Mus musculus miR-466f-5p 12 80
>mmu-miR-696 MIMAT0003483 Mus musculus miR-696
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 cacacgc 7
|||||||
Sbjct: 7 cacacgc 1
>pxy-miR-8492 MIMAT0033700 Plutella xylostella miR-8492
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacacg 6
||||||
Sbjct: 3 cacacg 8
>blv-miR-B2-3p MIMAT0025861 Bovine leukemia miR-B2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacgc 7
||||||
Sbjct: 7 acacgc 2
>prv-miR-LLT3 MIMAT0025306 Pseudorabies virus miR-LLT3
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacacg 6
||||||
Sbjct: 3 cacacg 8
>hvu-miR6206 MIMAT0024834 Hordeum vulgare miR6206
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 cacacg 6
||||||
Sbjct: 3 cacacg 8
>mtr-miR5213-5p MIMAT0021146 Medicago truncatula miR5213-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacacg 6
||||||
Sbjct: 8 cacacg 3
>bmo-miR-3406-3p MIMAT0015612 Bombyx mori miR-3406-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacgc 7
||||||
Sbjct: 8 acacgc 3
>mtr-miR2631 MIMAT0013395 Medicago truncatula miR2631
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 acacgc 7
||||||
Sbjct: 3 acacgc 8
>dme-miR-2496-5p MIMAT0012206 Drosophila melanogaster
miR-2496-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 acacgc 7
||||||
Sbjct: 8 acacgc 3
>bta-miR-2408 MIMAT0011966 Bos taurus miR-2408
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacacg 6
||||||
Sbjct: 8 cacacg 3
>mmu-miR-466f-5p MIMAT0004881 Mus musculus miR-466f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 cacacg 6
||||||
Sbjct: 8 cacacg 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 15
Number of extensions: 14
Number of successful extensions: 11
Number of sequences better than 100.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
